AtlasOfLivingAustralia/ala-name-matching issues and pull requests

#225 - Create a shaded version of the search library

Pull Request - State: open - Opened by charvolant 9 months ago - 1 comment

#224 - CAAB records in the combined index are missing the field source

Issue - State: open - Opened by adam-collins 9 months ago

#224 - CAAB records in the combined index are missing the field source

Issue - State: open - Opened by adam-collins 9 months ago - 1 comment

#223 - include taxonRankID in the combined names index

Issue - State: open - Opened by adam-collins 10 months ago

#222 - Provisional species names badly misparsed

Issue - State: open - Opened by dhobern about 2 years ago - 1 comment

#221 - Malformed names in the new backbone

Issue - State: open - Opened by Mesibov over 4 years ago - 1 comment

#220 - Spurious "accepted" names in new backbone

Issue - State: open - Opened by Mesibov over 4 years ago - 2 comments

#219 - Character problems with new backbone: 3

Issue - State: open - Opened by Mesibov over 4 years ago - 1 comment

#218 - Character problems with new backbone: 1

Issue - State: open - Opened by Mesibov over 4 years ago - 5 comments

#217 - Character problems with new backbone: 2

Issue - State: open - Opened by Mesibov over 4 years ago - 2 comments

#216 - iNaturalist as source of common names

Issue - State: open - Opened by nickdos about 5 years ago - 2 comments
Labels: enhancement, Names

#215 - NZOR names as duplicates

Issue - State: open - Opened by nickdos about 7 years ago - 2 comments

#214 - Naming matching search test cases need to be updated with updated taxon IDs

Issue - State: open - Opened by Sherrin-ALA 11 months ago
Labels: bug

#213 - Need to remove Tribes, Subtribes and Cultivars from APNI and APC input files

Issue - State: open - Opened by Sherrin-ALA 11 months ago
Labels: enhancement

#212 - Taxon Resolver lower upper bound failing with unresolved taxon

Issue - State: open - Opened by Sherrin-ALA 11 months ago

#211 - Merge process failing when input data where a synonym is marked as the parent of the accepted name

Issue - State: open - Opened by Sherrin-ALA 11 months ago

#210 - Scientific Name Authorship - Names without authors being selected over accepted names with authors

Issue - State: open - Opened by Sherrin-ALA 11 months ago
Labels: bug

#209 - Language sensitive matching

Issue - State: open - Opened by javier-molina about 1 year ago
Labels: enhancement

#208 - Change the way findElement works so that suspiciously similar synonyms can be found properly.

Pull Request - State: closed - Opened by charvolant about 1 year ago

#207 - Pterostylis sp. aff. boormanii (Sunset Country) being returned rather than Pterostylis sp. aff. boormanii

Issue - State: open - Opened by Sherrin-ALA over 1 year ago - 2 comments

#206 - testAutoComplete10

Issue - State: open - Opened by Sherrin-ALA over 1 year ago - 1 comment

#205 - Well, this is embarrassing

Pull Request - State: closed - Opened by charvolant over 1 year ago

#204 - Myrina not excluded

Issue - State: open - Opened by charvolant over 1 year ago

#203 - The return of Proboscidea

Issue - State: open - Opened by charvolant over 1 year ago - 2 comments
Labels: bug

#202 - Reject fuzzy matches when kingdoms do not match.

Issue - State: open - Opened by charvolant over 1 year ago

#201 - Merge minor variations in phrase names

Issue - State: open - Opened by charvolant over 1 year ago

#200 - Include DocValues for integer/double fields so that they can be sorted properly.

Pull Request - State: closed - Opened by charvolant over 1 year ago

#199 - Ensure IRMNG index has correct values

Pull Request - State: closed - Opened by charvolant over 1 year ago

#198 - IRMNG lucene index is placing kingdom name in family term

Issue - State: closed - Opened by charvolant over 1 year ago

#197 - Allows dashes in phrases for phrase names

Issue - State: open - Opened by charvolant over 1 year ago

#196 - Fix for issue #194

Pull Request - State: closed - Opened by charvolant over 1 year ago

#195 - Penalize accepted taxa without a parent

Issue - State: open - Opened by charvolant over 1 year ago

#194 - Ensure ssp. and subsp. in names are treated as the same entry

Issue - State: open - Opened by charvolant over 1 year ago

#193 - Badly parsed phrase names are being reallocated to higher taxa.

Issue - State: open - Opened by charvolant over 1 year ago

#192 - Import indentifier-only dataset

Pull Request - State: closed - Opened by charvolant over 1 year ago

#191 - Import identifier DwCA

Pull Request - State: closed - Opened by charvolant over 1 year ago - 1 comment

#190 - Fix for issue 189

Pull Request - State: closed - Opened by charvolant over 1 year ago

#189 - Test synonymy of excluded species

Issue - State: open - Opened by charvolant over 1 year ago

#188 - Import DwCA of identifiers

Issue - State: open - Opened by charvolant over 1 year ago

#187 - Common preferred vernacular names

Pull Request - State: closed - Opened by charvolant over 1 year ago

#186 - Bump development version

Pull Request - State: closed - Opened by charvolant over 1 year ago

#185 - Release 4.3

Pull Request - State: closed - Opened by charvolant over 1 year ago

#184 - Check for issue 182 (fix not required)

Pull Request - State: closed - Opened by charvolant over 1 year ago

#183 - The unholy union of fungi and algae

Issue - State: open - Opened by charvolant over 1 year ago

#182 - Match Grevillia 'Exul'

Issue - State: closed - Opened by charvolant over 1 year ago - 1 comment

#181 - Create consistent headline common name

Issue - State: closed - Opened by charvolant over 1 year ago

#180 - A miscellany of magical beasts

Pull Request - State: closed - Opened by charvolant over 1 year ago

#179 - Accepted name getting missed when there are many synonyms/misapplications

Issue - State: open - Opened by charvolant over 1 year ago

#178 - Scientific name being duplicated in name during index construction

Issue - State: open - Opened by charvolant over 1 year ago - 1 comment

#177 - Virus stop pattern being inconsistently applied

Issue - State: closed - Opened by charvolant over 1 year ago

#176 - Mitrella pulla is being classified as a plant

Issue - State: open - Opened by charvolant almost 2 years ago - 1 comment

#175 - Add Australian Algae Name Index

Issue - State: open - Opened by charvolant almost 2 years ago

#174 - Diplocheta choosing NZOR rather than AFD source

Issue - State: open - Opened by charvolant almost 2 years ago - 1 comment

#173 - Grammatophora oceanica var. macilenta and Grammatophora subtilissima mis-parented.

Issue - State: open - Opened by charvolant almost 2 years ago

#172 - Bump jackson-databind from 2.12.3 to 2.12.7.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#171 - Synthetic parent taxa cause child names to point to the parent in the identifier index

Issue - State: open - Opened by charvolant almost 2 years ago

#170 - Incorrect matching of `Grevillea`

Issue - State: open - Opened by nickdos almost 2 years ago

#169 - Bump jackson-databind from 2.12.3 to 2.13.4.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#168 - Improve species group coverage

Issue - State: open - Opened by nickdos almost 2 years ago
Labels: Names

#167 - Chondracanthus (Plantae) from CAAB being reallocated to Chondracanthus (Animalia) from AFD

Issue - State: open - Opened by charvolant almost 2 years ago

#166 - Add distribution and reference processing in merging

Pull Request - State: closed - Opened by charvolant about 2 years ago - 1 comment

#165 - Include sensu stricto and sensu lato variants under the species

Issue - State: open - Opened by charvolant about 2 years ago

#164 - Incorrect merging of Conoderus

Issue - State: open - Opened by charvolant about 2 years ago

#163 - Can't find nomenclatural code: ICNP

Issue - State: open - Opened by nickdos about 2 years ago

#162 - TaxonomyBuilder `OutOfMemoryError` error

Issue - State: closed - Opened by nickdos about 2 years ago - 2 comments

#161 - Name index should honour choice of vernacular name

Issue - State: open - Opened by charvolant about 2 years ago

#160 - Dilophus angustus (algae) being mis-placed under Insect

Issue - State: open - Opened by charvolant about 2 years ago - 2 comments

#159 - Niemeyera F.Muell. from APNI and APC not being unified

Issue - State: open - Opened by charvolant over 2 years ago

#158 - Add metadata.json to root directory of name index

Issue - State: open - Opened by charvolant over 2 years ago

#157 - NZOR Podocarpus laetus not being included as a taxon variant

Issue - State: open - Opened by charvolant over 2 years ago

#156 - Bump snapshot version

Pull Request - State: closed - Opened by charvolant over 2 years ago

#155 - Bump jackson-databind from 2.12.3 to 2.12.6.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#154 - Use name index 20210811-3 as a base

Issue - State: closed - Opened by charvolant over 2 years ago

#153 - Process synthetic name flag

Issue - State: closed - Opened by charvolant over 2 years ago

#152 - Release 4.2

Pull Request - State: closed - Opened by charvolant over 2 years ago

#151 - Handle loops

Pull Request - State: closed - Opened by charvolant over 2 years ago

#150 - Switch to index 20210811-3

Pull Request - State: closed - Opened by charvolant over 2 years ago - 1 comment

#149 - Synonym not being acted upon

Issue - State: open - Opened by charvolant over 2 years ago
Labels: bug

#148 - Dangling orthographic variants in APNI names only data

Issue - State: open - Opened by charvolant over 2 years ago

#147 - Bump development version

Pull Request - State: closed - Opened by charvolant over 2 years ago

#146 - Species missapplied in Australia but accepted in New Zealand

Issue - State: open - Opened by charvolant over 2 years ago - 4 comments

#145 - Release 4.1

Pull Request - State: closed - Opened by charvolant over 2 years ago

#144 - Update test cases for new index

Pull Request - State: closed - Opened by charvolant over 2 years ago

#143 - Correct lookup of documents from id index

Pull Request - State: closed - Opened by charvolant over 2 years ago

#142 - searchForRecordByLsid not working

Issue - State: closed - Opened by charvolant over 2 years ago

#141 - Import identifiers from DwCA

Pull Request - State: closed - Opened by charvolant over 2 years ago

#140 - Synonym of "Genus B" causing havoc

Issue - State: open - Opened by charvolant over 2 years ago - 1 comment

#139 - Allow merging of Chromista/Protozoa/Protista despite differing nomenclatural codes.

Pull Request - State: closed - Opened by charvolant over 2 years ago

#138 - Handle ambiguous nomenclatural codes/kingdoms

Issue - State: closed - Opened by charvolant almost 3 years ago

#137 - Exception in thread "main" java.lang.NoSuchFieldError: totalHits trying to create a index using the GBIF Taxonomy backbone

Issue - State: open - Opened by vjrj almost 3 years ago - 1 comment

#136 - 404 in some links of the Readme

Issue - State: closed - Opened by vjrj almost 3 years ago - 2 comments

#135 - Bump development version

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#134 - Release 4.0

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#133 - Fix autocomplete for lucene 8.0

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#132 - Autocomplete does not return sensible results with switch to lucene 8.0

Issue - State: closed - Opened by charvolant almost 3 years ago

#131 - Bring opencsv version into line with ala-namematching-service

Issue - State: open - Opened by charvolant almost 3 years ago

#130 - Fix for aff. taxon being merged into another taxon and opencsv update

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#129 - Make distribution module not make a jar

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#128 - Restructure into separate libraries

Pull Request - State: closed - Opened by charvolant almost 3 years ago

#127 - Restructure library to avoid pulling in masses of unnecessary libraries

Issue - State: closed - Opened by charvolant almost 3 years ago

GitHub / AtlasOfLivingAustralia/ala-name-matching issues and pull requests