AtChem/AtChem2 issues and pull requests

#517 - Compilation warnings for MacOS

Issue - State: open - Opened by rs028 6 months ago
Labels: to investigate

#516 - Revision of the manual

Pull Request - State: open - Opened by rs028 6 months ago - 1 comment

#515 - DILUTE Error with Latest Stoichiometry Update

Pull Request - State: closed - Opened by AlfredMayhew 6 months ago - 4 comments

#514 - Adding Stoichiometric Coefficients

Pull Request - State: closed - Opened by AlfredMayhew 7 months ago - 3 comments

#513 - Non-integer Stoichiometry

Issue - State: closed - Opened by AlfredMayhew 7 months ago - 2 comments
Labels: new feature

#512 - using mech_converter with the mechanism_skel.fac

Issue - State: closed - Opened by mixtli-c 7 months ago - 5 comments

#511 - Suggestion: use setup-fortran action from Marketplace

Issue - State: open - Opened by spco 7 months ago - 2 comments
Labels: enhancement, low priority

#510 - ifort deprecation

Issue - State: open - Opened by spco 7 months ago
Labels: low priority, to investigate

#509 - Use external tools for formatting and style

Issue - State: open - Opened by spco 8 months ago - 1 comment
Labels: enhancement

#508 - CVODE WARNING t + h = t

Issue - State: closed - Opened by lcsmmn 9 months ago - 11 comments

#507 - Specifying Custom FORTRAN Functions in the Mechanism

Pull Request - State: closed - Opened by AlfredMayhew 9 months ago - 15 comments

#506 - Run stops after sometime

Issue - State: closed - Opened by tanzinaakther 10 months ago - 2 comments

#505 - Refactor the mechanism conversion scripts

Issue - State: open - Opened by rs028 10 months ago - 1 comment
Labels: enhancement, help wanted

#504 - Test on macos

Pull Request - State: open - Opened by rs028 10 months ago

#503 - Why it says not constrained although I constrained J4

Issue - State: closed - Opened by tanzinaakther 10 months ago - 17 comments

#502 - Test code coverage

Pull Request - State: closed - Opened by rs028 10 months ago - 7 comments

#501 - Code coverage

Pull Request - State: closed - Opened by rs028 11 months ago - 6 comments

#500 - Corrected example mechanism path in README

Pull Request - State: closed - Opened by stulacy 11 months ago - 1 comment

#499 - Build function is not working

Issue - State: closed - Opened by tanzinaakther 12 months ago - 5 comments

#498 - CVODE ERROR

Issue - State: closed - Opened by zyh9291 about 1 year ago - 6 comments

#497 - Add support for kpp format

Pull Request - State: closed - Opened by rs028 about 1 year ago - 5 comments

#496 - Version 122

Pull Request - State: closed - Opened by rs028 about 1 year ago - 1 comment

#495 - Minor fixes fortran

Pull Request - State: closed - Opened by rs028 about 1 year ago - 1 comment

#494 - Support for CRI mechanism

Issue - State: open - Opened by ydwangcn about 1 year ago - 2 comments
Labels: to investigate, new feature

#493 - gfortran-9 removed from macos-11 runner image, causing a failing test

Issue - State: closed - Opened by spco about 1 year ago - 3 comments

#492 - Reducing any concentration of VOCs yields the same O3 concentration.

Issue - State: closed - Opened by 11aurora1 about 1 year ago - 1 comment

#490 - Fix plotting tools

Pull Request - State: closed - Opened by rs028 over 1 year ago - 3 comments

#489 - Mechanism file error

Issue - State: closed - Opened by tanzinaakther over 1 year ago - 15 comments

#488 - Compilation warning

Issue - State: open - Opened by rs028 over 1 year ago - 2 comments
Labels: to investigate

#487 - Check for duplicate reactions

Issue - State: open - Opened by rs028 over 1 year ago
Labels: enhancement

#486 - finding Lat Long input option

Issue - State: closed - Opened by tanzinaakther over 1 year ago - 2 comments

#485 - Error in constrained species

Issue - State: closed - Opened by tanzinaakther over 1 year ago - 17 comments

#484 - Emission of species

Issue - State: closed - Opened by morshedahmed17 over 1 year ago - 9 comments

#483 - Constraining Groups of Compounds

Issue - State: open - Opened by AlfredMayhew over 1 year ago - 5 comments
Labels: help wanted, new feature

#482 - Testsuite logging

Pull Request - State: closed - Opened by rs028 almost 2 years ago - 7 comments

#481 - Corrected information regarding the constraining of DILUTE

Pull Request - State: closed - Opened by AlfredMayhew almost 2 years ago - 2 comments

#480 - Error in JFAC

Issue - State: open - Opened by morshedahmed17 almost 2 years ago - 3 comments
Labels: bug, duplicate

#479 - Speed of calculations

Issue - State: open - Opened by rs028 almost 2 years ago - 3 comments
Labels: duplicate, enhancement, help wanted

#478 - Calculation of JFAC

Issue - State: open - Opened by rs028 almost 2 years ago - 1 comment
Labels: bug, enhancement

#477 - Speed of the simulation on HPC

Issue - State: closed - Opened by zyh929 almost 2 years ago - 10 comments
Labels: duplicate

#476 - Strange issue with mech_converter.py

Issue - State: closed - Opened by mixtli-c almost 2 years ago - 4 comments

#475 - Update install scripts

Pull Request - State: closed - Opened by rs028 almost 2 years ago - 1 comment

#474 - Note after run completion

Issue - State: closed - Opened by morshedahmed17 almost 2 years ago - 3 comments

#473 - Adding a new variable to constrain

Issue - State: open - Opened by mpperezp almost 2 years ago - 2 comments
Labels: duplicate, new feature

#472 - How to add photolysis frequency

Issue - State: closed - Opened by morshedahmed17 almost 2 years ago - 8 comments

#471 - Compiling Error from MCM Website Extract Tool When Looping over Inputted RO2s

Issue - State: closed - Opened by bethechange about 2 years ago - 6 comments

#470 - Species Constraints

Issue - State: closed - Opened by morshedahmed17 about 2 years ago - 16 comments

#469 - InitialConcentrations.config

Issue - State: closed - Opened by morshedahmed17 over 2 years ago - 1 comment

#468 - New Testsuite (3)

Pull Request - State: closed - Opened by rs028 over 2 years ago - 1 comment

#467 - Fixed input and output of constant photolysis rates

Pull Request - State: closed - Opened by AlfredMayhew over 2 years ago - 3 comments

#466 - Housekeeping

Pull Request - State: closed - Opened by rs028 over 2 years ago - 9 comments

#465 - New Testsuite (2)

Pull Request - State: closed - Opened by rs028 over 2 years ago - 4 comments

#464 - New Testsuite

Pull Request - State: closed - Opened by rs028 over 2 years ago - 9 comments

#463 - Error with test suite

Issue - State: closed - Opened by Jkhadgi over 2 years ago - 4 comments

#462 - Issue with cvode

Issue - State: closed - Opened by Jkhadgi over 2 years ago - 6 comments

#461 - productionRates.output and lossRates.output

Issue - State: closed - Opened by 1kyne-256 over 2 years ago - 5 comments

#460 - Disable LAPACK support in CVODE

Pull Request - State: closed - Opened by kilicomu almost 3 years ago - 3 comments

#459 - Escape colon character in LAPACK_LIBS string

Pull Request - State: closed - Opened by kilicomu almost 3 years ago - 5 comments

#458 - CVODE LAPACK support not functional but CI passes

Issue - State: closed - Opened by kilicomu almost 3 years ago - 17 comments
Labels: bug, question

#457 - Catch missing RO2 species error when prepping

Pull Request - State: closed - Opened by kilicomu almost 3 years ago - 1 comment

#456 - Add gfortran8 on macOS

Pull Request - State: closed - Opened by spco almost 3 years ago - 1 comment

#455 - Remove '8' from gfortran versions in ci.yml

Pull Request - State: closed - Opened by spco almost 3 years ago - 2 comments

#454 - Update CVODE download URL

Pull Request - State: closed - Opened by kilicomu almost 3 years ago - 4 comments

#453 - Array indexing error via mechanism.ro2

Issue - State: closed - Opened by kilicomu almost 3 years ago - 2 comments
Labels: bug

#452 - photolysis rate calculation (lat/lon specification)

Issue - State: closed - Opened by mpperezp almost 3 years ago - 2 comments

#451 - incompatible with MCMv3.3.1

Issue - State: closed - Opened by motimace about 3 years ago - 10 comments
Labels: bug, question

#450 - CodeCov not running properly

Issue - State: closed - Opened by rs028 about 3 years ago - 1 comment
Labels: bug

#449 - Species concentrations at output are too high

Issue - State: closed - Opened by motimace over 3 years ago - 1 comment

#448 - Make -O2 the default optimisation level on gfortran.

Pull Request - State: closed - Opened by spco over 3 years ago - 1 comment

#447 - Remove unittests group in codecov.yml - this is currently not working.

Pull Request - State: closed - Opened by spco over 3 years ago - 1 comment

#446 - Remove bashisms in two install files that run under /bin/sh.

Pull Request - State: closed - Opened by spco over 3 years ago - 1 comment

#445 - Start version 1.3-dev

Pull Request - State: closed - Opened by rs028 over 3 years ago - 5 comments

#444 - Fix missing code coverage files

Pull Request - State: closed - Opened by spco over 3 years ago - 2 comments

#443 - Trigger GitHub Actions on merge from PR or direct commit to master.

Pull Request - State: closed - Opened by spco over 3 years ago

#442 - Bashisms in sh scripts

Issue - State: closed - Opened by spco over 3 years ago - 1 comment
Labels: bug

#441 - Implement CI on GH Actions

Pull Request - State: closed - Opened by spco over 3 years ago - 13 comments

#440 - Release 1.2.1

Pull Request - State: closed - Opened by rs028 over 3 years ago - 6 comments

#439 - Move Travis to GitHub Actions

Issue - State: closed - Opened by spco over 3 years ago - 2 comments
Labels: high priority, testing

#438 - Fix c-bind bug in update_p()

Pull Request - State: closed - Opened by spco over 3 years ago - 4 comments

#437 - Stack smashing detected when run the test

Issue - State: closed - Opened by Albert-Chemistry over 3 years ago - 5 comments
Labels: bug

#436 - Size of the mechanism and speed of the simulation

Issue - State: open - Opened by rs028 over 3 years ago - 9 comments
Labels: help wanted, high priority, to investigate

#435 - Fortran runtime error

Issue - State: closed - Opened by jjunum over 3 years ago - 27 comments
Labels: bug, duplicate

#434 - Build_Atchem2.sh - make sharedlib issue

Issue - State: closed - Opened by baongocthai over 3 years ago - 10 comments

#433 - Remove tabs from configuration files

Pull Request - State: closed - Opened by rs028 almost 4 years ago - 1 comment

#432 - New environment variable

Pull Request - State: closed - Opened by rs028 almost 4 years ago - 5 comments

#431 - Need help about the example mechanism file

Issue - State: closed - Opened by xk-y about 4 years ago - 13 comments
Labels: bug

#430 - Start dev version

Pull Request - State: closed - Opened by rs028 about 4 years ago - 5 comments

#429 - Update travis.yml to not instal libffi on mac, given it is already installed

Pull Request - State: closed - Opened by spco about 4 years ago - 1 comment

#428 - Truncation changes

Pull Request - State: closed - Opened by AlfredMayhew about 4 years ago - 7 comments

#426 - Prod/Loss rate plotting tools

Issue - State: closed - Opened by xcy12 about 4 years ago - 8 comments
Labels: help wanted

#423 - test suite messages

Issue - State: closed - Opened by rs028 about 4 years ago - 3 comments
Labels: testing

#421 - Is it because of FRUIT?

Issue - State: closed - Opened by jjunum over 4 years ago - 3 comments
Labels: question

#416 - Use flags for the build script

Issue - State: open - Opened by rs028 over 4 years ago
Labels: question, new feature

#415 - Drop Python2 support

Issue - State: open - Opened by rs028 over 4 years ago - 7 comments
Labels: low priority

#414 - shared library directory

Issue - State: open - Opened by rs028 over 4 years ago - 4 comments
Labels: question

#406 - prod/loss rates output

Issue - State: open - Opened by Ekimmai almost 5 years ago - 3 comments
Labels: bug, to investigate

#399 - Make install scripts more robust

Issue - State: closed - Opened by spco almost 5 years ago - 4 comments
Labels: enhancement

#398 - Improve support for ifort

Issue - State: closed - Opened by rs028 almost 5 years ago - 9 comments
Labels: help wanted, low priority

#390 - floating-point warning

Issue - State: open - Opened by rs028 over 5 years ago - 1 comment
Labels: bug

#384 - Model crashing in winter months

Issue - State: open - Opened by mpanagi over 5 years ago - 23 comments
Labels: bug, to investigate

GitHub / AtChem/AtChem2 issues and pull requests