AstraZeneca/roo issues and pull requests

#92 - Ensure that the install does not download if all packages are available in the cache

Pull Request - State: closed - Opened by stefanoborini 8 months ago

#91 - Bump gitpython from 3.1.20 to 3.1.32

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#90 - Bump certifi from 2021.5.30 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#89 - Bump pygments from 2.9.0 to 2.15.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#88 - Added command `roo ci` to fail if rproject and lock are desynchronized.

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#87 - Ensure that packages are found even if the linked name is not matching.

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#86 - Release/0.17.0

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#85 - Fixed failing tests due to CRAN changes

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#84 - Change DESCRIPTION parser to be more robust against real DESCRIPTION files

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#83 - Bump requests from 2.26.0 to 2.31.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#82 - tidyverse makes locking fail because of data.table dependency

Issue - State: closed - Opened by notPlancha over 1 year ago - 3 comments

#81 - Update documentation so that it's in markdown format

Pull Request - State: closed - Opened by stefanoborini over 1 year ago

#80 - Release 0.16.0

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#79 - Fixed incorrect checkmark with VCS installation

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#78 - Add fix changed hash

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#77 - Release 0.15.0

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#76 - Bump gitpython from 3.1.20 to 3.1.30

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#75 - Release 0.14.0

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#74 - 58 ensure that a package is considered present if the DESCRIPTION file is present

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#73 - Add cache remove and cache list

Pull Request - State: closed - Opened by stefanoborini almost 2 years ago

#72 - CVE-2007-4559 Patch

Pull Request - State: open - Opened by TrellixVulnTeam almost 2 years ago

#71 - Bump certifi from 2021.5.30 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#70 - Improved error message in case of incorrect environment

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#69 - Ensure that the conservative flag is taken from the old lock if not s…

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#68 - Improved roo package search ui visual style

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#67 - Added run command

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#66 - Add Switch command to change R version on mac

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#65 - Release 0.13.2

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#64 - Added base as a core dependency

Pull Request - State: closed - Opened by stefanoborini about 2 years ago

#63 - 57 fix platform extraction on win

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#62 - Modified the installation icon to a milder green dot

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#61 - 60 Export renv-style locks

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#60 - Add support for exporting renv locks

Issue - State: closed - Opened by stefanoborini over 2 years ago

#59 - roo install of a conservative lock forces a re-locking

Issue - State: open - Opened by stefanoborini over 2 years ago

#58 - Ensure that the package is considered not existent if the Description file is not present but the dir is

Issue - State: closed - Opened by stefanoborini over 2 years ago

#57 - Roo platform extraction is incorrect on windows

Issue - State: closed - Opened by stefanoborini over 2 years ago

#56 - Ensure that discovery of R versions on linux is done invoking the command, rather than Rcmd

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#55 - Added /opt/R/ for attempted locations in detecting R executable optio…

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#54 - Release 0.13.0

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#53 - Show executable paths as options to the environment

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#52 - Provide a way to show the currently available R executables.

Issue - State: closed - Opened by stefanoborini over 2 years ago - 1 comment

#51 - Allow to specify the version of R to use when initing

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#50 - Add --r-version to roo environment init

Issue - State: closed - Opened by stefanoborini over 2 years ago - 1 comment

#49 - Add roo run to run with the currently setup R executable.

Issue - State: closed - Opened by stefanoborini over 2 years ago

#48 - conservative locking can raise keyerror in some circumstances

Issue - State: open - Opened by stefanoborini over 2 years ago

#47 - Use pubgrub resolver

Issue - State: open - Opened by stefanoborini over 2 years ago

#46 - Release 0.12.1

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#45 - Fix restrictive detection of R path on linux machines

Pull Request - State: closed - Opened by stefanoborini over 2 years ago

#44 - Releases/0.12.0

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#43 - Added Documentation on usage

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#42 - Add local source to use CRAN-like entries on our local disk

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#41 - 40 Allow to specify priority in sources

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#40 - Allow to specify hiding repositories so that we don't risk version stealing when two repos have the same entity

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#39 - Harden concurrency issues

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#38 - Harden vcs cloning concurrency

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#37 - Removed user notifier in favor of full rich console

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#36 - 27 Handle dependencies with R of different versions

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#35 - Automatic lookup should prepend instead of append result of "which R"

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#34 - Separated the commands into subdirectories

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#33 - 27 Verify the version of R in the init file, and use the environment data for version info

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#32 - Refactored rprofile into an object

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#31 - 10 Introduced more communicative error message in case of resolution …

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#30 - 26 roo install installs on default environment

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#29 - Basic addition of --use-vanilla. To be finalised

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#28 - 23 environment init with no value will raise confusing exceptions

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#27 - support R4 and beyond

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#26 - roo install installs on the default environment even with a different environment enabled.

Issue - State: closed - Opened by stefanoborini almost 3 years ago

#25 - On windows, removal of packages can fail because Rstudio is locking dlls

Issue - State: open - Opened by stefanoborini almost 3 years ago

#24 - Automatic lookup of R executable should prepend instead of append the path of the which result

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#23 - roo environment init with no name will raise confusing exceptions

Issue - State: closed - Opened by stefanoborini almost 3 years ago

#22 - Failure FileExist error during lock

Issue - State: open - Opened by stefanoborini almost 3 years ago

#21 - Allow to generate description file from metadata

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#20 - Proxy from envvars is not found when proxy is not specified in rip.lock

Issue - State: open - Opened by stefanoborini almost 3 years ago

#19 - Downloading message appears not to be written on windows

Issue - State: open - Opened by stefanoborini almost 3 years ago

#18 - package search mvtnorm takes a very long time

Issue - State: open - Opened by stefanoborini almost 3 years ago

#17 - Improve installation process so that output is printed as packages are installed

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#16 - Add ability to patch downloaded packages before build

Issue - State: open - Opened by stefanoborini almost 3 years ago

#15 - Improve error message when dependency is not resolved

Issue - State: open - Opened by stefanoborini almost 3 years ago

#14 - Ensure that the environment created contains the R version in the directory hierarchy

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#13 - Add link to install package in development mode

Issue - State: open - Opened by stefanoborini almost 3 years ago

#12 - Ensure flexibility of environment deployment path in the generated init file

Issue - State: open - Opened by stefanoborini almost 3 years ago

#11 - build fails on windows installation

Issue - State: open - Opened by stefanoborini almost 3 years ago

#10 - Inform which package is looking for a dependency of a specific version during locking

Issue - State: closed - Opened by stefanoborini almost 3 years ago

#9 - roo lock conservative raises exception

Issue - State: open - Opened by stefanoborini almost 3 years ago

#8 - roo lock --conservative should honor a change in the specified dependencies at the rproject level

Issue - State: open - Opened by stefanoborini almost 3 years ago

#7 - roo environments list fails if no environments have been created

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#6 - Stop with meaningful message if RTools is not found on windows

Issue - State: open - Opened by stefanoborini almost 3 years ago

#5 - Star operator seems not to work as a dependency version specification

Issue - State: open - Opened by stefanoborini almost 3 years ago

#4 - Add support for multiple environments

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#3 - add --use-vanilla to the R CMD INSTALL execution

Issue - State: closed - Opened by stefanoborini almost 3 years ago - 1 comment

#2 - Fix failing test due to changed constraints

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

#1 - Added README and classifier metadata to the pyproject file

Pull Request - State: closed - Opened by stefanoborini almost 3 years ago

GitHub / AstraZeneca/roo issues and pull requests