Armavica/rebop issues and pull requests

#61 - chore: release v0.9.2

Pull Request - State: open - Opened by armavicas-release-app[bot] 9 days ago

#60 - deps: update rand to v0.9 and rand_distr to v0.5

Pull Request - State: closed - Opened by Armavica 9 days ago

#59 - Update version and release date in CITATION.cff

Pull Request - State: open - Opened by jonaspleyer 10 days ago

#58 - Allow parameter names starting with inf or nan

Pull Request - State: open - Opened by maurosilber 13 days ago - 2 comments

#57 - Not allowed rate names

Issue - State: open - Opened by maurosilber 13 days ago

#56 - Fix parameters on docs index page

Pull Request - State: closed - Opened by Armavica 14 days ago

#55 - doc: add example with Michaelis-Menten rate

Pull Request - State: closed - Opened by Armavica 14 days ago

#54 - Parameters

Pull Request - State: closed - Opened by Armavica 14 days ago

#53 - chore: release v0.9.1

Pull Request - State: closed - Opened by armavicas-release-app[bot] 14 days ago

#52 - Various small fixes

Pull Request - State: closed - Opened by Armavica 15 days ago

#51 - doc: add badges for the PyPI version and RTD docs

Pull Request - State: closed - Opened by Armavica 16 days ago

#50 - doc: fix name of optional dependencies in rtd config

Pull Request - State: closed - Opened by Armavica 16 days ago

#49 - doc: add rust tooling to the readthedocs environment

Pull Request - State: closed - Opened by Armavica 16 days ago

#48 - doc: fix readthedocs install

Pull Request - State: closed - Opened by Armavica 16 days ago

#47 - doc: add a readthedocs page

Pull Request - State: closed - Opened by Armavica 16 days ago

#46 - Fix rates

Pull Request - State: closed - Opened by Armavica 22 days ago

#45 - feat: allow giving arbitrary rates from Python

Pull Request - State: closed - Opened by Armavica 22 days ago

#44 - Add a third option for sparsity

Pull Request - State: closed - Opened by Armavica 22 days ago

#43 - Make a proper Python wrapper over the library bindings

Pull Request - State: closed - Opened by Armavica 24 days ago - 3 comments

#42 - changed: changed seed argument to rng to conform to SPEC-7

Pull Request - State: closed - Opened by Armavica 24 days ago

#41 - Ignore mypy errors

Pull Request - State: closed - Opened by Armavica 24 days ago

#40 - chore: release v0.9.0

Pull Request - State: closed - Opened by armavicas-release-app[bot] 24 days ago

#39 - Identify threshold for sparsity

Issue - State: open - Opened by Armavica 24 days ago

#38 - Add Pixi support

Pull Request - State: closed - Opened by Armavica 24 days ago

#37 - Synchronize stub file docstrings with original docstrings

Issue - State: closed - Opened by Armavica about 1 month ago

#36 - feat: save subset of variables

Pull Request - State: closed - Opened by maurosilber about 1 month ago - 3 comments

#35 - Fix and expose sparsity

Pull Request - State: closed - Opened by maurosilber about 1 month ago - 2 comments

#34 - Add type stubs for python code

Pull Request - State: closed - Opened by maurosilber about 1 month ago - 9 comments

#33 - Add type stubs for python code

Pull Request - State: closed - Opened by maurosilber about 1 month ago

#32 - Bump actions/attest-build-provenance from 1 to 2 in the actions group

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#31 - Pre commit

Pull Request - State: closed - Opened by Armavica about 2 months ago

#30 - chore: upgrade dependencies

Pull Request - State: closed - Opened by Armavica 4 months ago

#29 - Repo review

Pull Request - State: closed - Opened by Armavica 4 months ago

#28 - chore: release v0.9.0

Pull Request - State: closed - Opened by armavicas-release-app[bot] 5 months ago

#27 - Add CITATION.cff file

Pull Request - State: closed - Opened by Armavica 5 months ago

#26 - Different results when changing nb_steps

Issue - State: open - Opened by maurosilber 5 months ago - 2 comments

#25 - chore: release v0.8.3

Pull Request - State: closed - Opened by armavicas-release-app[bot] 7 months ago

#25 - chore: release v0.8.3

Pull Request - State: closed - Opened by armavicas-release-app[bot] 7 months ago

#24 - chore: Use GitHub app to make release-plz trigger workflows

Pull Request - State: closed - Opened by Armavica 7 months ago

#24 - chore: Use GitHub app to make release-plz trigger workflows

Pull Request - State: closed - Opened by Armavica 7 months ago

#23 - Add release-plz config

Pull Request - State: closed - Opened by Armavica 7 months ago

#23 - Add release-plz config

Pull Request - State: closed - Opened by Armavica 7 months ago

#22 - chore: release v0.8.2

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#22 - chore: release v0.8.2

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#21 - Bump pre-commit/action from 3.0.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#21 - Bump pre-commit/action from 3.0.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#20 - Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#20 - Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#19 - Release plz and dependabot

Pull Request - State: closed - Opened by Armavica 7 months ago

#19 - Release plz and dependabot

Pull Request - State: closed - Opened by Armavica 7 months ago

#18 - Return full trajectory when nb_steps=0

Pull Request - State: closed - Opened by Armavica 7 months ago

#17 - Upgrade pyo3 and maturin

Pull Request - State: closed - Opened by Armavica 7 months ago

#16 - full trajectory

Issue - State: closed - Opened by dave-doty 7 months ago - 9 comments

#15 - Maturin

Pull Request - State: closed - Opened by Armavica 8 months ago

#14 - Upgrade to maturin 1.6

Pull Request - State: closed - Opened by Armavica 8 months ago

#13 - Update github CI

Pull Request - State: open - Opened by Armavica 8 months ago

#12 - Add seed specification from python

Pull Request - State: closed - Opened by Armavica about 1 year ago

#11 - Add a .gitattributes file

Pull Request - State: closed - Opened by Armavica about 1 year ago

#10 - Ruff

Pull Request - State: closed - Opened by Armavica about 1 year ago

#9 - Allow to refer to species amounts in rate exprs

Pull Request - State: closed - Opened by Armavica over 1 year ago

#8 - Support SBML

Issue - State: open - Opened by Armavica almost 2 years ago

#7 - Add events

Issue - State: open - Opened by Armavica almost 2 years ago

#6 - Fix higher-order reaction rates

Issue - State: closed - Opened by Armavica over 3 years ago

#5 - Cannot use several define_system in the same file

Issue - State: closed - Opened by Armavica over 3 years ago

#4 - Reexport rand and rand_distr

Issue - State: closed - Opened by Armavica over 3 years ago

#3 - Python bindings

Issue - State: closed - Opened by Armavica over 3 years ago - 1 comment

#2 - Tau leaping

Issue - State: open - Opened by Armavica over 3 years ago

#1 - Seeding Rngs

Issue - State: closed - Opened by Armavica over 3 years ago

GitHub / Armavica/rebop issues and pull requests