AmsterdamUMC/AmsterdamUMCdb issues and pull requests

#103 - Added "provider_id" is not null check in order to make it compatible with the Google BigQuery.

Pull Request - State: open - Opened by acanakoglu 23 days ago

#102 - Temporal artery temperature

Issue - State: open - Opened by joamats about 1 month ago

#101 - Updated tracks

Pull Request - State: closed - Opened by paulelbers about 2 months ago

#100 - OMOP Common Data Model

Pull Request - State: closed - Opened by patrickthoral about 2 months ago - 1 comment

#99 - SvO2 measurements

Issue - State: open - Opened by simonschallmoser 2 months ago

#98 - Identifying cardiac surgery patients

Issue - State: open - Opened by perryla 3 months ago - 1 comment

#97 - Implausible amount of infused crystalloids

Issue - State: open - Opened by narkode 4 months ago

#96 - Pre-ICU admission data

Issue - State: open - Opened by rriccilopes 5 months ago

#95 - What does the item "UrineIncontinentie" output volume means?

Issue - State: closed - Opened by arielhasidim 8 months ago - 1 comment

#94 - Bump urllib3 from 1.26.12 to 1.26.18

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#93 - Bump pillow from 9.3.0 to 10.0.1

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#92 - Bump urllib3 from 1.26.12 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#91 - Vasopressin use

Issue - State: open - Opened by brunotomazini 10 months ago - 2 comments

#90 - Palliative/DNR/DNI orders

Issue - State: open - Opened by SimoneZappa 10 months ago - 2 comments

#89 - Bump jupyter-server from 1.23.2 to 2.7.2

Pull Request - State: open - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#88 - Bump tornado from 6.3.2 to 6.3.3

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#87 - Bump certifi from 2022.12.7 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#86 - Bump pygments from 2.13.0 to 2.15.0

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#85 - Bump grpcio from 1.50.0 to 1.53.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#84 - Units for certain drug dosages (steroids) missing

Issue - State: closed - Opened by surajraj99 about 1 year ago - 1 comment

#83 - Bump tornado from 6.2 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#82 - Bump requests from 2.28.1 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#81 - Is there a viggette to identify sepsis patients

Issue - State: closed - Opened by zh-zhang1984 about 1 year ago - 2 comments

#80 - Identifying patients with a MI diagnosis

Issue - State: open - Opened by pmugambi about 1 year ago - 1 comment

#79 - The role of Aspirin in clinical treatment in Netherlands

Issue - State: open - Opened by pmugambi over 1 year ago - 1 comment

#78 - Teasing out analgesics from the sedatives/analgesics/CZS drug category

Issue - State: open - Opened by pmugambi over 1 year ago - 1 comment

#77 - Where do I find the patients' medical history?

Issue - State: open - Opened by pmugambi over 1 year ago - 2 comments
Labels: enhancement

#76 - How do I obtain the patient's diagnosis?

Issue - State: closed - Opened by pmugambi over 1 year ago

#75 - can't find the blood urea nitrogen values

Issue - State: closed - Opened by LILIHAN-001 over 1 year ago - 1 comment

#74 - Bump ipython from 8.6.0 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#73 - Bump certifi from 2022.9.24 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#72 - unified PostgreSQL and BigQuery processing

Pull Request - State: closed - Opened by patrickthoral over 1 year ago - 1 comment

#71 - Are these numbers reasonable?

Issue - State: closed - Opened by sullen-194 over 1 year ago - 3 comments

#70 - Machine Learning and Reasoning for Health 2022

Pull Request - State: closed - Opened by patrickthoral over 1 year ago - 1 comment

#69 - fix reason for admission SQL code #49

Pull Request - State: closed - Opened by patrickthoral over 1 year ago - 1 comment

#68 - Questions from sofa script

Issue - State: open - Opened by tedinburgh over 1 year ago - 1 comment

#67 - Questions from reason for admission script

Issue - State: open - Opened by tedinburgh over 1 year ago - 1 comment

#66 - SOFA platelet calculation

Issue - State: closed - Opened by tariqdam almost 2 years ago - 1 comment

#65 - How to get access using another email (different from the institutional email) to Google BigQuery

Issue - State: open - Opened by mostafaalishahi almost 2 years ago - 6 comments

#64 - Destinations

Issue - State: open - Opened by EmmaRocheteau almost 2 years ago - 2 comments

#63 - changed doserateunitid check for calculating gamma

Pull Request - State: closed - Opened by tariqdam about 2 years ago - 1 comment

#62 - icunity mapping, bigquery support

Pull Request - State: closed - Opened by patrickthoral about 2 years ago - 1 comment

#61 - Measurements after date of death

Issue - State: open - Opened by Niccolo-Ajroldi over 2 years ago - 2 comments

#60 - Recordings labelled as "(Set)"

Issue - State: open - Opened by T3hlo over 2 years ago - 1 comment

#59 - Duplicate measurements

Issue - State: closed - Opened by T3hlo over 2 years ago

#58 - Locations MC&IC and IC&MC

Issue - State: open - Opened by T3hlo over 2 years ago - 1 comment

#57 - Where can I find the results of blood culture?

Issue - State: closed - Opened by lyliuff over 2 years ago - 1 comment

#56 - Best Practice to Extract In-hospital Mortality Label

Issue - State: open - Opened by oezyurty over 2 years ago - 2 comments

#55 - Mental Health Patients

Issue - State: closed - Opened by MEladawi over 2 years ago - 1 comment

#54 - "value too large"

Issue - State: open - Opened by demon9514753 over 2 years ago - 4 comments

#53 - "Drukzak"-Item in AMDS Database

Issue - State: closed - Opened by aegis301 over 2 years ago - 1 comment

#52 - language problem of the database!

Issue - State: closed - Opened by pxjsmile over 2 years ago - 1 comment

#51 - Comorbidities

Issue - State: open - Opened by FrancescaAlf over 2 years ago - 1 comment

#50 - Laboratory vs blood gas sodium values

Issue - State: closed - Opened by ariercole over 2 years ago - 2 comments

#49 - SQL issue in reason_for_admission.ipynb

Issue - State: closed - Opened by tedinburgh over 2 years ago - 3 comments

#48 - follow up time

Issue - State: open - Opened by XiangBu over 2 years ago - 2 comments

#47 - tutorial for ESICM LIVES 2021

Pull Request - State: closed - Opened by patrickthoral almost 3 years ago - 1 comment

#46 - encoding problem

Issue - State: closed - Opened by XiangBu about 3 years ago - 5 comments

#45 - ventilator weaning

Issue - State: closed - Opened by shuai720 about 3 years ago - 1 comment

#44 - ventilator weaning

Issue - State: closed - Opened by shuai720 about 3 years ago

#43 - improves plotting of outlier histograms

Pull Request - State: closed - Opened by patrickthoral about 3 years ago - 1 comment

#42 - fix apache ii score calculation

Pull Request - State: closed - Opened by patrickthoral about 3 years ago - 1 comment

#41 - fix SOFA liver score calculation

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#40 - Allow negative dates in `get_fluidbalance()`

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#39 - Fixes Google BigQuery `Project must be a string` error.

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#38 - Apache II bugs

Issue - State: closed - Opened by patrickthoral about 3 years ago - 1 comment
Labels: bug

#37 - Error when admissionid is negative in get_fluidbalance amsterdamumcdb/fluidbalance.py

Issue - State: closed - Opened by joaocolaco about 3 years ago - 3 comments
Labels: bug

#36 - Typo in calculation of liver SOFA score

Issue - State: closed - Opened by mattwillis47 about 3 years ago - 1 comment
Labels: bug

#35 - created faq

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#34 - added lactate to dictionary

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#33 - CHF, ESRD and Sepsis

Issue - State: open - Opened by Gh-pishgahi about 3 years ago - 1 comment

#32 - added datathon challenge tracks

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#31 - BigQuery improvements

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#30 - Bigquery2

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#29 - High Resolution Waveforms

Issue - State: closed - Opened by etolma5 about 3 years ago - 1 comment

#28 - Update link to colab

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#27 - Datathon amsterdam

Pull Request - State: closed - Opened by patrickthoral about 3 years ago

#26 - Ethnicity of patients

Issue - State: closed - Opened by FrancescaAlf about 3 years ago - 1 comment

#25 - Urine output and serum creatinine measurements

Issue - State: open - Opened by FrancescaAlf about 3 years ago - 5 comments

#24 - How should I inquire about patients admitted to the hospital for trauma?

Issue - State: closed - Opened by xujiameng over 3 years ago - 2 comments

#23 - ventilatory mode

Issue - State: closed - Opened by snafees over 3 years ago - 1 comment

#22 - Diabetes diagnosis

Issue - State: closed - Opened by dplecko over 3 years ago - 1 comment

#21 - Some variables related to sepsis

Issue - State: closed - Opened by yinchangchang over 3 years ago - 4 comments

#20 - Where to find culture information for sepsis-3 cohort

Issue - State: closed - Opened by yinchangchang over 3 years ago - 2 comments

#19 - Information on AUMC ICUs

Issue - State: closed - Opened by nbenn over 3 years ago - 3 comments

#18 - fewer eosinophils than basophils?

Issue - State: closed - Opened by dplecko over 3 years ago - 2 comments

#17 - added zip compatibility

Pull Request - State: closed - Opened by patrickthoral over 3 years ago

#16 - Concepts and dictionaries.

Pull Request - State: closed - Opened by patrickthoral over 3 years ago

#15 - Concepts

Pull Request - State: closed - Opened by patrickthoral over 3 years ago

#14 - ICD codes

Issue - State: closed - Opened by nbenn over 3 years ago - 2 comments

#13 - Issues extracting zip Archive

Issue - State: closed - Opened by nbenn over 3 years ago - 11 comments
Labels: enhancement

#12 - Units of measurement

Issue - State: closed - Opened by dplecko almost 4 years ago - 4 comments

#11 - Building SOFA on AUMC

Issue - State: closed - Opened by dplecko almost 4 years ago - 1 comment

#10 - Negative Date of Death?

Issue - State: closed - Opened by ajb5d almost 4 years ago - 1 comment

#9 - Any possibility for Sepsis study in AmsterdamUMCdb?

Issue - State: closed - Opened by onlyzdd about 4 years ago

#8 - Where to find APACHE IV scores

Issue - State: open - Opened by wesleyyeung over 4 years ago

#7 - Preferred Citation

Issue - State: closed - Opened by ajb5d over 4 years ago - 3 comments

#6 - Version 1.0.2 March 2020/manuscript submission

Pull Request - State: closed - Opened by patrickthoral over 4 years ago

#5 - confused numeric items

Issue - State: closed - Opened by peiyaoli over 4 years ago - 2 comments

#4 - ITEM dictionary required

Issue - State: closed - Opened by peiyaoli over 4 years ago - 3 comments

GitHub / AmsterdamUMC/AmsterdamUMCdb issues and pull requests