AmpliconSuite/AmpliconRepository issues and pull requests

#100 - Issue 47

Pull Request - State: closed - Opened by forrestkim over 1 year ago

#99 - Aesthetic changes to tables

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: enhancement

#98 - Frontpage updates

Pull Request - State: closed - Opened by forrestkim over 1 year ago - 2 comments

#97 - performance improvements for opening a project page

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#96 - Speeding up loading of large projects

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#95 - Fix case of filename Googlelogo.png to prevent broken img

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#94 - Adding documentation on dev server and local admin

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: documentation

#93 - Change from being a button containing a link to a link styled as a bu…

Pull Request - State: closed - Opened by liefeld over 1 year ago

#92 - The scrollbar was because of a race between bootstrap and datatables …

Pull Request - State: closed - Opened by liefeld over 1 year ago - 1 comment

#91 - tweak bar chart labels

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#90 - issue 88, remove the extra step page after selecting login via social…

Pull Request - State: closed - Opened by liefeld over 1 year ago

#89 - Download button only using the button text to initiate download

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#88 - Sign in via Google/Globus Styling

Issue - State: closed - Opened by edwin5588 over 1 year ago - 1 comment

#87 - frontpage-updates branch: adding a grid of icons to the front page

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#86 - [issue-62- branch] Vertical scroll bar appears in sample feature table regardless of size

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#85 - Issue 62

Pull Request - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#84 - Project view plotly

Pull Request - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#83 - Login styling

Pull Request - State: closed - Opened by liefeld over 1 year ago

#82 - Issue 78

Pull Request - State: closed - Opened by liefeld over 1 year ago

#81 - Add Google Analytics across the site

Issue - State: closed - Opened by forrestkim over 1 year ago
Labels: enhancement

#80 - Working version of scripts for starting dev server in docker.

Pull Request - State: closed - Opened by liefeld over 1 year ago

#79 - Using the content manager?

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: enhancement

#78 - Adding a "Featured" tab to main page projects list

Issue - State: closed - Opened by jluebeck over 1 year ago - 3 comments
Labels: enhancement

#77 - Fix for edit project to use id and not name

Pull Request - State: closed - Opened by liefeld over 1 year ago

#76 - Issue 69

Pull Request - State: closed - Opened by liefeld over 1 year ago - 1 comment

#75 - Issue 70

Pull Request - State: closed - Opened by liefeld over 1 year ago

#74 - Hover information hidden in sample page

Issue - State: closed - Opened by ahujar27 over 1 year ago - 2 comments
Labels: non-critical bug

#73 - Newly created private projects not showing up in private projects tab

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: bug

#72 - incorporate latest changes from main into project_view_plotly

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#71 - bugfix to timestamp formatting

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#70 - New projects should be private by default

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: enhancement

#69 - Project deletion doesn't work the second time around

Issue - State: closed - Opened by jluebeck over 1 year ago - 3 comments
Labels: non-critical bug

#68 - Easier local deployment

Issue - State: closed - Opened by forrestkim over 1 year ago - 2 comments

#67 - Pull request to fix IGV bug where the IGV viewer is still showing 'all' when selecting an amplicon

Pull Request - State: closed - Opened by edwin5588 over 1 year ago

#66 - IGV viewer still displays "all" view on many amplicons

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#65 - create a purge local db script

Pull Request - State: closed - Opened by forrestkim over 1 year ago - 2 comments

#64 - catch date modification ValueError

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#63 - address colored bar selection and improve CN selection capabilities

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#62 - Clicking a row in a sample table will display the amplicon png image on the sample page

Issue - State: closed - Opened by jluebeck over 1 year ago - 7 comments
Labels: enhancement

#61 - Clear all local projects?

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: question

#60 - safer handling of load sample_metadata when file missing

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#59 - igv.js returning "all" instead of specific location

Issue - State: closed - Opened by forrestkim over 1 year ago - 1 comment

#58 - bug fix for project id and name

Pull Request - State: closed - Opened by forrestkim over 1 year ago - 1 comment

#57 - added new download and updates to ui

Pull Request - State: closed - Opened by forrestkim over 1 year ago

#56 - updates to time formatting. issue #43

Pull Request - State: closed - Opened by edwin5588 over 1 year ago - 2 comments

#55 - Handle CNV bed file "Not Provided"

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#54 - Improve performance of /create-project for larger projects

Issue - State: closed - Opened by forrestkim over 1 year ago - 5 comments
Labels: enhancement

#53 - "Project already exists" message after deleting project

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: non-critical bug

#52 - Display sample metadata on sample pages

Issue - State: closed - Opened by jluebeck over 1 year ago - 3 comments
Labels: enhancement

#51 - Add "Genome" column to project table

Issue - State: closed - Opened by jluebeck over 1 year ago - 4 comments
Labels: enhancement

#50 - Sample view plotly

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#49 - UI: Color of selected row is too similar to link text color

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#48 - Issue when loading samples derived from intermediate AmpliconSuite entry-points

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: documentation

#47 - Sample download should include the AA outputs for the sample

Issue - State: closed - Opened by jluebeck over 1 year ago - 4 comments
Labels: enhancement

#46 - Issue 28 22 fixes to merge into main.

Pull Request - State: closed - Opened by edwin5588 over 1 year ago - 4 comments

#45 - Improve home page content

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#44 - Project members required to be specified on new project

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: enhancement

#43 - Timestamp formatting

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#42 - UI suggestions for user's projects page

Issue - State: closed - Opened by jluebeck over 1 year ago
Labels: enhancement

#41 - Merge latest updates into issue_28_22 (GRCh37/hg19 updates)

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#40 - No-amp samples should report feature count of 0 in sample page table

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#39 - Issue 36

Pull Request - State: closed - Opened by liefeld over 1 year ago

#38 - bugfix to views.py

Pull Request - State: closed - Opened by jluebeck over 1 year ago

#37 - UI - put png/pdf on one line on sample page

Issue - State: closed - Opened by liefeld over 1 year ago - 1 comment

#36 - UI improvements

Issue - State: closed - Opened by liefeld over 1 year ago - 1 comment
Labels: enhancement

#35 - Sample display must handle missing images

Issue - State: closed - Opened by liefeld over 1 year ago - 2 comments

#34 - Project load/display must handle missing images

Issue - State: closed - Opened by liefeld over 1 year ago
Labels: bug

#33 - Merge pull request #32 from mesirovlab/main

Pull Request - State: closed - Opened by forrestkim over 1 year ago

#32 - Updating project download for merge

Pull Request - State: closed - Opened by forrestkim over 1 year ago

#31 - Project view plotly

Pull Request - State: closed - Opened by forrestkim over 1 year ago

#30 - Change project links to use uuid instead of project name

Pull Request - State: closed - Opened by liefeld over 1 year ago

#29 - Updating CCLE samples

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#28 - Adding support for GRCh37

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: enhancement

#27 - Toggling amplicons from sample page plotly view hides only the first interval

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#26 - IGV receives wrong coordinates for multi-chromosomal amplicons

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#25 - Display all chromosomes toggle does not have an effect on no-amp samples

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment
Labels: non-critical bug

#24 - Local deployment code 400 when clicking images

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#23 - Set an empty table on sample page when no focal amps present

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#22 - KeyError when clicking on samples

Issue - State: closed - Opened by jluebeck over 1 year ago - 3 comments
Labels: bug

#21 - Unable to edit members of private project

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#20 - Parsing and tokenizing email addresses in project members form

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#19 - OSError at /accounts/signup

Issue - State: closed - Opened by edwin5588 over 1 year ago - 3 comments
Labels: bug

#18 - Create default 'testuser' account in default GB/Django settings

Issue - State: closed - Opened by liefeld over 1 year ago - 2 comments
Labels: enhancement

#17 - Adding delete project functionality

Issue - State: closed - Opened by jluebeck over 1 year ago
Labels: enhancement

#16 - Handling of no-amp samples

Issue - State: closed - Opened by jluebeck over 1 year ago - 2 comments
Labels: enhancement

#15 - Project URL based on a UID instead of project title

Issue - State: closed - Opened by jluebeck over 1 year ago - 4 comments
Labels: enhancement

#14 - Make private/Make public functionality for projects

Issue - State: closed - Opened by jluebeck over 1 year ago - 4 comments
Labels: enhancement

#13 - Sample and project download revisions

Issue - State: closed - Opened by jluebeck over 1 year ago
Labels: enhancement

#12 - Enabling all-chromosome view toggle on sample pages

Issue - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#11 - InvalidID error when downloading CCLE test dataset

Issue - State: closed - Opened by jluebeck almost 2 years ago - 1 comment
Labels: bug

#10 - No table column-sorting on Sample page table

Issue - State: closed - Opened by jluebeck almost 2 years ago

#9 - Broken AA amplicon images on Sample pages

Issue - State: closed - Opened by jluebeck almost 2 years ago - 4 comments
Labels: bug

#8 - Rename Github repo to AmpliconRepository or similar

Issue - State: closed - Opened by jluebeck almost 2 years ago
Labels: enhancement

#7 - UnboundLocalError at /create-project/

Issue - State: closed - Opened by jluebeck almost 2 years ago - 6 comments

#6 - Added igv, image loading, and improved search

Pull Request - State: closed - Opened by forrestkim almost 2 years ago

#5 - File Not Found Error in Sample View

Issue - State: closed - Opened by tusharagashe almost 2 years ago - 1 comment

#4 - Search

Pull Request - State: closed - Opened by forrestkim about 2 years ago

#3 - Sample view plotly

Pull Request - State: closed - Opened by GinoP123 about 2 years ago

#2 - Sample view plotly

Pull Request - State: closed - Opened by GinoP123 about 2 years ago - 1 comment

#1 - Sample view plotly

Pull Request - State: closed - Opened by GinoP123 about 2 years ago

GitHub / AmpliconSuite/AmpliconRepository issues and pull requests