AllonKleinLab/cospar issues and pull requests

#28 - allow different keys to annotate color of cells in a clone in clones_on_manifold

Pull Request - State: closed - Opened by Ruijiang-Fu about 1 year ago

#27 - What is your opinion on applying it to cancer cells?

Issue - State: open - Opened by Dragonlongzhilin almost 2 years ago

#26 - Error in running CoSpar on the Lung differentiation dataset

Issue - State: closed - Opened by bhyu0217 almost 2 years ago - 2 comments

#25 - test2

Issue - State: closed - Opened by ShouWenWang about 2 years ago

#24 - test

Issue - State: closed - Opened by ShouWenWang about 2 years ago - 1 comment

#23 - clarification for one time point clone inference

Issue - State: closed - Opened by cnk113 about 2 years ago - 1 comment

#22 - cospar slides

Issue - State: closed - Opened by ShouWenWang about 2 years ago

#21 - Long computation time

Issue - State: open - Opened by PaulArthurM over 2 years ago - 1 comment

#20 - infer_Tmap_from_multitime_clones file saving error

Issue - State: closed - Opened by cnk113 over 2 years ago - 5 comments

#19 - Import scanpy not found

Issue - State: closed - Opened by cnk113 over 2 years ago - 7 comments

#18 - Visualize trees with CoSpar

Issue - State: open - Opened by ShouWenWang over 2 years ago - 4 comments

#17 - Does it only apply to the dataset with exogenous cell barcodes?

Issue - State: open - Opened by sharonyx over 2 years ago - 5 comments

#16 - Why the clonal density profile is determined by P(t)=I(t)S(t)

Issue - State: open - Opened by ShouWenWang almost 3 years ago

#15 - Get the ground-truth annotation for the LARRY dataset (Fig. 4c)

Issue - State: open - Opened by ShouWenWang almost 3 years ago

#14 - Documentation request -- table to match up paper and software

Issue - State: closed - Opened by ekernf01 almost 3 years ago - 3 comments

#13 - Selecting time point pairs for transition map

Issue - State: closed - Opened by jindalk almost 3 years ago - 5 comments

#12 - test notification

Issue - State: closed - Opened by smcgeary almost 3 years ago - 10 comments

#11 - CoSpar Memory usage

Issue - State: closed - Opened by jindalk almost 3 years ago - 4 comments

#10 - Can this tool be applied in TracerSeq?

Issue - State: closed - Opened by xiaozhongshen almost 3 years ago - 5 comments

#9 - Clones different dates

Issue - State: closed - Opened by Shervinhk almost 3 years ago - 3 comments

#8 - Count matrix of compressed sparse row matrix object

Issue - State: closed - Opened by MehrshadSD almost 3 years ago - 1 comment

#7 - cospar_usage_illustration

Issue - State: closed - Opened by ShouWenWang about 3 years ago

#6 - Development plans

Issue - State: closed - Opened by ShouWenWang over 3 years ago
Labels: enhancement

#5 - X_clone estimation

Issue - State: closed - Opened by RyanYip-Kat over 3 years ago - 3 comments

#4 - test_data_1

Issue - State: closed - Opened by ShouWenWang over 3 years ago

#3 - data

Issue - State: closed - Opened by ShouWenWang over 3 years ago - 2 comments

#2 - fig2

Issue - State: closed - Opened by ShouWenWang almost 4 years ago

#1 - CoSpar_fig1