AllenInstitute/neuroglia issues and pull requests

#120 - MNT: Stop using ci-helpers in appveyor.yml

Issue - State: open - Opened by pllim about 4 years ago

#119 - adds banner

Pull Request - State: closed - Opened by neuromusic about 6 years ago

#118 - WIP updates docs for SfN

Pull Request - State: closed - Opened by neuromusic about 6 years ago - 1 comment

#117 - continuous deployment appveyor

Pull Request - State: closed - Opened by mochic about 6 years ago - 1 comment
Labels: enhancement

#116 - add changelog

Pull Request - State: closed - Opened by mochic about 6 years ago - 1 comment
Labels: enhancement

#115 - deployment plan

Issue - State: open - Opened by mochic about 6 years ago
Labels: enhancement

#114 - adds more examples

Pull Request - State: closed - Opened by neuromusic about 6 years ago - 1 comment

#113 - remove channels to fix wheel building via anaconda dist

Pull Request - State: closed - Opened by mochic about 6 years ago - 1 comment

#112 - pypi deployment from travis for linux & osx

Pull Request - State: closed - Opened by mochic about 6 years ago - 1 comment

#111 - Bump version: 0.2.9 → 0.2.10

Pull Request - State: open - Opened by neuromusic about 6 years ago - 1 comment

#110 - bumpversion to bump2version

Pull Request - State: closed - Opened by mochic over 6 years ago - 1 comment
Labels: enhancement

#109 - remove merge junk from api docs

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#108 - merge junk in API reference

Issue - State: closed - Opened by NileGraddis over 6 years ago

#107 - Delete test.sh

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 1 comment

#106 - ci for python 3.7

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 1 comment

#105 - skips by default if marked as slow

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 1 comment

#104 - implements PEP440 standard in bumpversion

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 1 comment

#103 - support annotating neuron edge when creating tensor

Issue - State: open - Opened by neuromusic over 6 years ago

#102 - supply posargs to pytest in tox

Pull Request - State: closed - Opened by mochic over 6 years ago

#101 - add tests with jfriedrich's test values

Pull Request - State: closed - Opened by mochic over 6 years ago - 1 comment

#100 - more deconvolution tests

Pull Request - State: closed - Opened by j-friedrich over 6 years ago - 4 comments

#99 - adds example of creating synthetic calcium trace

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 2 comments

#98 - implements infrastructure for downloading datasets

Pull Request - State: open - Opened by neuromusic over 6 years ago - 1 comment

#97 - [WIP] adds "Resampler" for traces

Pull Request - State: open - Opened by neuromusic over 6 years ago - 1 comment

#96 - cleaning up docs

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#95 - this should fix documentation building on readthedocs

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#94 - Enh/improve test coverage

Pull Request - State: closed - Opened by mochic over 6 years ago - 2 comments

#93 - improve test coverage

Issue - State: closed - Opened by mochic over 6 years ago - 1 comment
Labels: enhancement, help wanted

#92 - add appveyor and travis badges to readme

Pull Request - State: closed - Opened by mochic over 6 years ago - 1 comment

#91 - Bug/docs 2

Pull Request - State: closed - Opened by mochic over 6 years ago - 2 comments

#90 - Bug/docs

Pull Request - State: closed - Opened by mochic over 6 years ago

#89 - Enh/travis

Pull Request - State: closed - Opened by mochic over 6 years ago

#88 - update setup.py install_requires, test wheels in appveyor

Pull Request - State: closed - Opened by mochic over 6 years ago

#87 - Enh/appveyor continuous building

Pull Request - State: closed - Opened by mochic over 6 years ago - 2 comments

#86 - attempt to add pypi upload

Pull Request - State: closed - Opened by mochic over 6 years ago - 2 comments

#85 - improve coverage by changing pytest-cov settings

Pull Request - State: closed - Opened by mochic over 6 years ago - 2 comments

#84 - Feature/event reducer

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#83 - adds epoch reducer

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#82 - add test code for OASIS

Pull Request - State: closed - Opened by j-friedrich over 6 years ago - 1 comment

#81 - Fix/circle build

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#80 - adds support for binder

Pull Request - State: closed - Opened by neuromusic over 6 years ago

#79 - [WIP] remove OASIS dependency by integrating into package

Pull Request - State: closed - Opened by neuromusic over 6 years ago - 4 comments

#78 - add "datasets" module

Issue - State: closed - Opened by neuromusic over 6 years ago

#77 - add OASIS as contribution

Pull Request - State: closed - Opened by j-friedrich over 6 years ago - 1 comment

#76 - Feature request: source extraction for calcium images

Issue - State: open - Opened by mpmbq2 over 6 years ago - 1 comment

#75 - add support for codecov.io

Issue - State: closed - Opened by neuromusic almost 7 years ago - 1 comment

#74 - automatically publish pre-releases on github

Issue - State: closed - Opened by neuromusic almost 7 years ago - 2 comments

#73 - improve PEP8 compliance

Issue - State: open - Opened by neuromusic almost 7 years ago

#72 - pipenv instead of requirements files

Issue - State: closed - Opened by mochic almost 7 years ago - 2 comments
Labels: enhancement, question

#71 - refactor tox & circle configurations

Pull Request - State: closed - Opened by neuromusic almost 7 years ago - 2 comments

#70 - new default icon

Pull Request - State: closed - Opened by neuromusic almost 7 years ago

#69 - use calcium image as default

Pull Request - State: closed - Opened by neuromusic almost 7 years ago

#68 - Bugfix/build docs

Pull Request - State: closed - Opened by neuromusic almost 7 years ago

#67 - fix readthedocs build

Issue - State: closed - Opened by neuromusic almost 7 years ago

#66 - update README

Pull Request - State: closed - Opened by neuromusic almost 7 years ago

#65 - setup readthedocs

Issue - State: closed - Opened by neuromusic almost 7 years ago

#64 - add CONTRIBUTING.md

Issue - State: closed - Opened by neuromusic almost 7 years ago

#63 - add BSD3 license

Issue - State: closed - Opened by neuromusic almost 7 years ago

#62 - adds assets necessary for public release

Pull Request - State: closed - Opened by neuromusic almost 7 years ago - 1 comment

#61 - Enh/optional oasis

Pull Request - State: closed - Opened by mochic almost 7 years ago

#60 - [WIP] Enh/58 interpolation methods

Pull Request - State: closed - Opened by mochic almost 7 years ago
Labels: enhancement, help wanted

#59 - friendlier tox

Pull Request - State: closed - Opened by mochic almost 7 years ago

#58 - implement more interpolation methods for PeriEventTraceSampler

Issue - State: open - Opened by neuromusic almost 7 years ago
Labels: enhancement

#57 - move robust_std to utils.py

Issue - State: open - Opened by neuromusic almost 7 years ago
Labels: enhancement, help wanted, good first issue

#56 - improve installation

Pull Request - State: closed - Opened by neuromusic almost 7 years ago - 1 comment

#55 - add example: spike inference on spikefinder datasets

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: enhancement, docs

#54 - calcium refactoring

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 2 comments

#53 - Fix/neuropixels

Pull Request - State: closed - Opened by neuromusic about 7 years ago

#52 - [WIP] adding doscstrings

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 1 comment

#51 - docs: show examples on API pages

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: enhancement, help wanted, docs

#50 - docs: get autosummary class to display each method's docstrings

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: enhancement, help wanted, docs

#49 - implement epoch reducers

Issue - State: closed - Opened by neuromusic about 7 years ago - 1 comment
Labels: enhancement

#48 - refactor spike inference

Issue - State: closed - Opened by neuromusic about 7 years ago
Labels: enhancement

#47 - add example: smoothing with multiple kernels

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: enhancement, docs

#46 - add example: calcium decoding.py

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: enhancement, good first issue

#45 - make test fails

Issue - State: closed - Opened by nicain about 7 years ago - 1 comment
Labels: bug, good first issue

#44 - Bug: tox.ini

Issue - State: closed - Opened by nicain about 7 years ago - 8 comments
Labels: bug, good first issue

#43 - [WIP] new transformer: EpochTraceReducer

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 2 comments

#42 - documentation

Issue - State: closed - Opened by neuromusic about 7 years ago

#41 - documentation tooling

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 2 comments

#40 - implements edge detection

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 2 comments

#33 - added calcium stuff - sahar

Pull Request - State: closed - Opened by saharmanavi about 7 years ago

#29 - add docstrings to calcium module

Issue - State: open - Opened by neuromusic about 7 years ago
Labels: bug, docs

#28 - add docstrings to nwb module

Issue - State: closed - Opened by neuromusic about 7 years ago
Labels: bug

#27 - add docstrings to trace module

Issue - State: closed - Opened by neuromusic about 7 years ago
Labels: bug

#26 - add docstrings to spike module

Issue - State: closed - Opened by neuromusic about 7 years ago
Labels: bug

#25 - should Smoother accept an explicit list of neurons?

Issue - State: closed - Opened by neuromusic about 7 years ago
Labels: enhancement

#24 - testing event transformers

Pull Request - State: closed - Opened by neuromusic about 7 years ago - 3 comments

#22 - Transformers should inherit from BaseEstimator as well

Issue - State: closed - Opened by neuromusic about 7 years ago - 1 comment
Labels: bug

#18 - Example notebooks

Pull Request - State: closed - Opened by neuromusic about 7 years ago

#11 - spike inference

Issue - State: closed - Opened by neuromusic over 7 years ago - 2 comments

#10 - implement dF/F as Trace -> Trace transformer

Issue - State: closed - Opened by neuromusic over 7 years ago - 1 comment
Labels: enhancement

#9 - add example: synchrony.py

Issue - State: open - Opened by neuromusic over 7 years ago - 1 comment
Labels: enhancement, docs

#8 - identify open datasets for demos

Issue - State: closed - Opened by neuromusic over 7 years ago - 2 comments

#7 - [demo] reliability

Issue - State: closed - Opened by neuromusic over 7 years ago
Labels: enhancement

#6 - transformers TO Tensors should output xarrays

Issue - State: closed - Opened by neuromusic over 7 years ago - 1 comment
Labels: enhancement

#5 - PeriEventTraceTensorizer should accept multiple data structures for trace

Issue - State: open - Opened by neuromusic over 7 years ago
Labels: enhancement

#4 - PeriEventSpikeTensorizer should accept multiple data structures for spikes

Issue - State: open - Opened by neuromusic over 7 years ago
Labels: enhancement

#3 - allow for neuron-specific smoothing kernels

Issue - State: closed - Opened by neuromusic over 7 years ago - 1 comment
Labels: enhancement

#2 - add docstrings to event module

Issue - State: closed - Opened by neuromusic over 7 years ago
Labels: bug

GitHub / AllenInstitute/neuroglia issues and pull requests