AllenInstitute/deepinterpolation issues and pull requests

#116 - TypeError: expected str, bytes or os.PathLike object, not dict

Issue - State: open - Opened by llingss 12 days ago

#114 - Version 0.2.0 not on PyPi?

Issue - State: open - Opened by alejoe91 4 months ago

#113 - Update README.rst

Pull Request - State: closed - Opened by jeromelecoq 4 months ago

#112 - Update README.rst

Pull Request - State: closed - Opened by jeromelecoq 8 months ago

#111 - Update README.rst

Pull Request - State: closed - Opened by jeromelecoq 8 months ago

#110 - Update README.rst

Pull Request - State: closed - Opened by jeromelecoq 8 months ago

#109 - Update config.yml

Pull Request - State: closed - Opened by jeromelecoq 8 months ago

#108 - Update config.yml

Pull Request - State: closed - Opened by jeromelecoq 8 months ago

#107 - This PR is a significant refactor to delayer the repo and remove clutter.

Pull Request - State: closed - Opened by jeromelecoq 10 months ago - 8 comments

#106 - 2D slicing in MovieJSONGenerator when single movie is cached

Pull Request - State: closed - Opened by mikejhuang about 1 year ago

#105 - Supported python versions

Issue - State: open - Opened by sanjayankur31 about 1 year ago

#104 - Add logging

Pull Request - State: closed - Opened by aamster about 1 year ago - 1 comment

#101 - 1p generator does not exist

Issue - State: open - Opened by fatihdinc over 1 year ago

#100 - Update default seed

Pull Request - State: closed - Opened by aamster over 1 year ago - 1 comment

#99 - Inference takes one and a half day to run on a single movie

Issue - State: open - Opened by fatihdinc over 1 year ago

#97 - add gh actions PR summarizer

Pull Request - State: open - Opened by mikejhuang over 1 year ago - 2 comments

#96 - Deprecate mlflow

Issue - State: open - Opened by mikejhuang over 1 year ago

#95 - Tkinter RuntimeError with repeated fine-tuning runs

Issue - State: open - Opened by g-bond over 1 year ago

#94 - Combined inference optimizations

Pull Request - State: closed - Opened by mikejhuang over 1 year ago - 10 comments

#93 - Rebase Scott's staging/ophys_etl branch to fix/faster_inference

Pull Request - State: closed - Opened by mikejhuang over 1 year ago - 3 comments

#92 - Fine_tuning decay learning rate error

Issue - State: open - Opened by BijanPesaran over 1 year ago

#91 - Various optimizations to generator, inference, and training

Pull Request - State: closed - Opened by mikejhuang over 1 year ago - 2 comments

#90 - Various optimizations

Pull Request - State: closed - Opened by mikejhuang over 1 year ago

#89 - Fine tuning parameter error

Issue - State: open - Opened by nataliekoh almost 2 years ago

#88 - Fix/faster inference

Pull Request - State: closed - Opened by jeromelecoq almost 2 years ago - 2 comments

#87 - Pass same multiprocessing settings to evaluate as to fit

Pull Request - State: closed - Opened by aamster over 2 years ago - 2 comments

#86 - img_per_movie calculation is incorrect

Issue - State: open - Opened by aamster over 2 years ago
Labels: bug

#85 - Rename lims_ids

Issue - State: open - Opened by aamster over 2 years ago

#84 - Set keras model.fit verbosity to 2

Issue - State: open - Opened by aamster over 2 years ago

#83 - allow/non/lims/filepaths

Pull Request - State: open - Opened by danielsf over 2 years ago

#82 - steps_per_epoch': ['Unknown field.']

Issue - State: closed - Opened by frikyng over 2 years ago - 15 comments

#81 - Ophys Example with sample data on GPU: OOM Error

Issue - State: open - Opened by ChrisWiesbrock almost 3 years ago - 5 comments

#80 - OverflowError: cannot serialize a bytes object larger than 4 GiB (reduction.py)

Issue - State: open - Opened by asumser almost 3 years ago - 10 comments

#79 - steps_in_epoch wrongly assigned to generator_params in cli_examples

Issue - State: open - Opened by asumser almost 3 years ago

#78 - move to predict_on_batch

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago - 9 comments

#77 - GPU memory error doing inference on GPU with some version combination

Issue - State: open - Opened by jeromelecoq almost 3 years ago - 7 comments

#76 - h5py is causing some conda installation problem on some system

Issue - State: open - Opened by jeromelecoq almost 3 years ago - 1 comment

#74 - Bump to supported tensorflow

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago

#72 - need to update requirements.txt

Issue - State: closed - Opened by danielsf almost 3 years ago - 12 comments

#71 - Fix new examples with main

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago - 1 comment

#70 - Fix #68

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago

#69 - collector generator training presents same samples many times

Issue - State: closed - Opened by alihaydaroglu almost 3 years ago - 2 comments

#68 - multiprocessing issues on windows

Issue - State: closed - Opened by alihaydaroglu almost 3 years ago - 2 comments

#67 - Feature/multiple tf versions

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago - 3 comments

#66 - Inference is misspelled to inferrence throughout the repo

Issue - State: open - Opened by jeromelecoq almost 3 years ago

#65 - inference module looks like it leaves HDF5 file handle open during computation

Issue - State: open - Opened by danielsf almost 3 years ago

#64 - default run_uid behavior not conducive to HPC

Issue - State: open - Opened by danielsf almost 3 years ago

#63 - Improve inference CLI standardization and flexibility

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago - 1 comment

#62 - Develop CLI training examples

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago - 1 comment

#61 - Feature/fix inference norm

Pull Request - State: closed - Opened by jeromelecoq almost 3 years ago

#60 - Add training ability to CLI

Pull Request - State: closed - Opened by jeromelecoq about 3 years ago - 3 comments

#59 - The dockerfile repository path is hard-coded and points to github

Issue - State: closed - Opened by orpinchasov over 3 years ago - 5 comments

#58 - adds chunking to inference output

Pull Request - State: closed - Opened by djkapner over 3 years ago - 1 comment

#57 - Mlflow inference

Pull Request - State: closed - Opened by aamster over 3 years ago - 9 comments

#56 - renames test file names according to standard naming convention.

Pull Request - State: closed - Opened by djkapner over 3 years ago

#55 - inference: accept path or dict

Issue - State: open - Opened by djkapner over 3 years ago - 1 comment

#54 - inference: single location for scaling, dtype specification

Issue - State: closed - Opened by djkapner over 3 years ago - 1 comment

#53 - Feature/command line interface

Pull Request - State: closed - Opened by djkapner over 3 years ago - 2 comments

#52 - Feature/test suite

Pull Request - State: closed - Opened by jeromelecoq over 3 years ago - 1 comment

#51 - adds docker build and deploy to repo

Pull Request - State: closed - Opened by djkapner over 3 years ago - 3 comments

#50 - Feature/inferrence multithread

Pull Request - State: closed - Opened by jeromelecoq over 3 years ago - 1 comment

#49 - Batch size truncates inference output

Issue - State: open - Opened by dlamay over 3 years ago

#48 - Inference keras multiprocess

Pull Request - State: closed - Opened by djkapner over 3 years ago

#47 - Adds docker build

Pull Request - State: closed - Opened by djkapner over 3 years ago - 1 comment