Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / AllenInstitute/AllenSDK issues and pull requests
#2750 - fix for nans in table["color"].str.match(color_triplet_re)
Pull Request -
State: open - Opened by RobertoDF 2 months ago
#2749 - Missing links to model example .tgz files
Issue -
State: open - Opened by campagnola 2 months ago
Labels: bug
#2748 - automatic retrival of connections data
Issue -
State: open - Opened by Ahuitzol99 3 months ago
Labels: question
#2747 - pip install not working
Issue -
State: open - Opened by bmidler 3 months ago
- 1 comment
Labels: bug
#2746 - Cannot install AllenSDK on Windows
Issue -
State: open - Opened by MatteoCarandini 4 months ago
Labels: bug
#2745 - incorrect values for `imaging_depth` column in VisualBehaviorOphysProjectCache ophys_experiment_table
Issue -
State: open - Opened by matchings 4 months ago
- 2 comments
Labels: bug
#2744 - Python 3.12 support
Issue -
State: open - Opened by adamltyson 6 months ago
Labels: enhancement
#2743 - Retrieving Shuffled Frame IDs
Issue -
State: open - Opened by isabelgaron 8 months ago
Labels: question
#2742 - Unable to download cache files
Issue -
State: open - Opened by VictorSeven 10 months ago
Labels: bug
#2741 - FIlenote FOUnd error for LFP data
Issue -
State: closed - Opened by AngCamp 10 months ago
- 2 comments
Labels: bug
#2740 - Provide accurate documentation for brain_observatory_cache.get_eye_tracking
Pull Request -
State: open - Opened by chaseking 11 months ago
- 1 comment
#2739 - Creating drifting gratings (frame by frame)
Issue -
State: open - Opened by SalvoCalcagno 11 months ago
Labels: question
#2738 - Rc/2.16.2
Pull Request -
State: closed - Opened by morriscb 12 months ago
- 1 comment
#2737 - Does the Allen_sdk require openssl to be 3.1.4 or can it use a newer version as well?
Issue -
State: closed - Opened by AngCamp 12 months ago
Labels: bug
#2736 - The link to the latest source documentation is broken (google chrome, windows 11)
Issue -
State: closed - Opened by AngCamp about 1 year ago
- 1 comment
Labels: bug
#2735 - rc/2.16.1
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 1 comment
#2734 - Hotfix for #2733
Pull Request -
State: closed - Opened by RobertoDF about 1 year ago
- 2 comments
#2733 - Broken .get_performance_metrics() method in VisualBehaviorNeuropixelsProjectCache.from_s3_cache(cache_dir=neuropixel_dataset_behavior)
Issue -
State: open - Opened by RobertoDF about 1 year ago
- 2 comments
Labels: bug
#2732 - Missing channels in LFP data, also is the LFP pre-scaled?
Issue -
State: closed - Opened by AngCamp about 1 year ago
- 1 comment
Labels: question
#2731 - ticket/PSB-260: Bug fix to VBN
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 2 comments
#2730 - Ticket/PSB-7
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 2 comments
#2729 - ticket/PSB-257: Investigate AllenSDK test failure for python3.9
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 3 comments
#2728 - Ticket/PSB-249: Address comments on final release candidate.
Pull Request -
State: closed - Opened by morriscb about 1 year ago
#2727 - Update conda-forge package
Issue -
State: open - Opened by dyf about 1 year ago
- 2 comments
Labels: enhancement
#2726 - Ticket/PSB-207:
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 1 comment
#2725 - Error: pg_config executable not found. - Installing on Compute Canada
Issue -
State: closed - Opened by AngCamp about 1 year ago
- 2 comments
Labels: bug
#2724 - Ticket/PSB-235: Fixes needed for data release
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 2 comments
#2723 - ticket/PSB-227: Revert to json for vbn packaging.
Pull Request -
State: closed - Opened by morriscb about 1 year ago
#2722 - Rc/2.16.0
Pull Request -
State: closed - Opened by morriscb about 1 year ago
- 2 comments
#2721 - ticket/PSB-200: Clean up rc/2.16.0
Pull Request -
State: closed - Opened by morriscb about 1 year ago
#2720 - unpin hdmf and pynwb
Pull Request -
State: closed - Opened by mikejhuang about 1 year ago
- 1 comment
#2719 - DriftingGratings.get_response() does not explain what the ncells+1'th response corresponds to
Issue -
State: open - Opened by HDictus about 1 year ago
Labels: bug
#2718 - Cannot load both VisualCoding and VisualBehavior caches in the same Jupyter Notebook
Issue -
State: closed - Opened by EricKenjiLee about 1 year ago
- 1 comment
Labels: bug
#2717 - incorrect task parameter value in session metadata for TRAINING_0 and TRAINING_1
Issue -
State: open - Opened by matchings over 1 year ago
- 1 comment
Labels: bug
#2716 - Update Dependency Compatibility
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
#2715 - ticket/PSB155: Add is_sham_change column.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2714 - Fix for namespaces issue
Pull Request -
State: closed - Opened by brendanjohnharris over 1 year ago
- 1 comment
#2713 - Simultaneously importing `ecephys_project_cache` and `behavior_ecephys_session` breaks nwb file reading
Issue -
State: open - Opened by brendanjohnharris over 1 year ago
- 3 comments
Labels: bug
#2712 - Ticket/PSB-167: Add quality to metadata table
Pull Request -
State: closed - Opened by morriscb over 1 year ago
#2711 - KeyError: 'sweeps_by_type'
Issue -
State: open - Opened by win2dvp21 over 1 year ago
Labels: bug
#2710 - Resolve dependencies refresh
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
- 7 comments
#2709 - How to access Neuropixels session end time?
Issue -
State: open - Opened by slcalgin over 1 year ago
Labels: question
#2708 - ticket/PSB-173: Create allensdk_anaconda3 image in Pika dockerhub. Modify Bamboo script
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2707 - Ticket/psb-171: Various fixes for VBO release
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 2 comments
#2706 - `hdmf` requirement is not compatible with latest `pynwb`
Issue -
State: open - Opened by jsiegle over 1 year ago
Labels: bug
#2705 - Issue with statsmodels in allensdk install
Issue -
State: open - Opened by ajuavinett over 1 year ago
- 1 comment
Labels: bug
#2704 - Poetry dependency manager
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
- 1 comment
#2703 - Bump aiohttp from 3.7.4 to 3.8.5
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 3 comments
Labels: dependency
#2702 - how can I get the brain surface dorsal-ventral ccf coordinates for different probes?
Issue -
State: open - Opened by QingqingJZhang over 1 year ago
Labels: question
#2701 - fixes issue with loading trials from BehaviorEcephysSession.from_nwb
Pull Request -
State: closed - Opened by aamster over 1 year ago
#2700 - Psb 127/mouse connectivity cache bugfix
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
- 2 comments
#2699 - ticket/PSB-134: Unpin statsmodels
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 3 comments
#2698 - Ticket/psb-167: Fix spurious omitted stimuli at beginning of VBN sessions
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2697 - PSB-156 load probe lfp metadata without needing to load lfp
Pull Request -
State: closed - Opened by aamster over 1 year ago
#2696 - Add 'quality' column to VBN units metadata table
Issue -
State: open - Opened by corbennett over 1 year ago
- 1 comment
Labels: enhancement
#2695 - Nondoctrialbug
Pull Request -
State: closed - Opened by corbennett over 1 year ago
- 1 comment
#2694 - Request (Allen Brain Observatory Data): Access to ophys metadata as csv files
Issue -
State: open - Opened by ehennestad over 1 year ago
Labels: enhancement
#2693 - Error reading NWB file while session cache is instantiated in workspace
Issue -
State: open - Opened by slcalgin over 1 year ago
Labels: question
#2692 - Ticket/PSB-126: Include the "Natrual Movie 1" shown to the mice as part of the data release.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2691 - Ticket/PSB-126: Include the "Natrual Movie 1" shown to the mice as part of the data release.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
#2690 - brain observatory pupil size data
Issue -
State: closed - Opened by mohamadamin-fjz over 1 year ago
- 1 comment
Labels: question
#2689 - Ticket/PSB-130:
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2688 - Jupyter notebook instance to access data on AWS gets stuck and fails during creation
Issue -
State: closed - Opened by atleer over 1 year ago
- 2 comments
Labels: bug
#2687 - pip install allensdk fails in new Conda environment
Issue -
State: closed - Opened by Jballbe over 1 year ago
- 15 comments
Labels: bug
#2686 - Ticket/PSB-125: Fix bugs in stimulus_presentations table discovered during NWB validation
Pull Request -
State: closed - Opened by morriscb over 1 year ago
#2685 - Flawed primary injection structure logic
Issue -
State: closed - Opened by lydiang over 1 year ago
- 1 comment
#2684 - JSONDecodeError when running oapi.get_structures_with_sets([1])
Issue -
State: open - Opened by pderdeyn over 1 year ago
- 1 comment
Labels: bug
#2683 - Ophys NWB Conversion fails if a dff file is missing
Issue -
State: open - Opened by Ahad-Allen over 1 year ago
- 9 comments
Labels: bug
#2682 - Bugfix/im read
Pull Request -
State: closed - Opened by Ahad-Allen over 1 year ago
- 1 comment
#2681 - add_lfp_to_nwb Function seems to add the LFP probe data twice
Issue -
State: open - Opened by Ahad-Allen over 1 year ago
Labels: question
#2680 - Optogenetic information in NWB files could be using a more specific data type
Issue -
State: open - Opened by Ahad-Allen over 1 year ago
Labels: enhancement
#2679 - ticket/PSB-42: Address issues arrising from VBO NWB validation.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2678 - Fix gaussian_function_2d flipped axes
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
#2677 - datasets diffrences
Issue -
State: open - Opened by alih100011 over 1 year ago
- 1 comment
Labels: question
#2676 - extract event trace
Issue -
State: open - Opened by alih100011 over 1 year ago
Labels: question
#2675 - ticket/PSB-90: Modify VBO metadata writer to test upload of NWBs to S3 cache
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 2 comments
#2674 - PSB-17 Read session type, date of acquisition from db
Pull Request -
State: closed - Opened by aamster over 1 year ago
#2673 - ticket/PSB-86: Small behavior NWB file creation fixup
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2672 - Using imread for Ophys Projections automatically casts them to floats
Issue -
State: open - Opened by Ahad-Allen over 1 year ago
Labels: bug
#2671 - Add seeds to notebooks
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
- 1 comment
#2670 - Changes to support python 3.10
Pull Request -
State: closed - Opened by aamster over 1 year ago
- 1 comment
#2669 - Ticket/psb 49/fix fit 2d gaussian
Pull Request -
State: closed - Opened by mikejhuang over 1 year ago
- 2 comments
#2668 - ticket/PSB-91: Add trials_id calculation to BehaviorSession creation.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 6 comments
#2667 - ticket/PSB-70: Flipped running polarity for VBN behavior only sessions.
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2666 - Color annotations for Allen Mouse Brain Atlas
Issue -
State: closed - Opened by mariakesa over 1 year ago
- 2 comments
Labels: question
#2665 - Ticket/PSB-44: Explicit naming of VBO stim blocks
Pull Request -
State: closed - Opened by morriscb over 1 year ago
- 1 comment
#2664 - Feature non behavior ophys nwb
Pull Request -
State: open - Opened by Ahad-Allen over 1 year ago
- 2 comments
#2663 - Adding support for stimuli in omFISH project (STAGE_0 and STAGE_1 session types)
Pull Request -
State: open - Opened by omidzobeiri almost 2 years ago
- 1 comment
#2662 - ticket/PSB-43: Parse key stimulus & imaging modality features and record them individually
Pull Request -
State: closed - Opened by morriscb almost 2 years ago
#2661 - Flipped running polarity for VBN behavior only sessions
Issue -
State: open - Opened by corbennett almost 2 years ago
- 13 comments
Labels: bug
#2660 - update VBO read the docs page
Pull Request -
State: closed - Opened by matchings almost 2 years ago
Labels: behavior
#2659 - Various fixes to dff calculation
Pull Request -
State: closed - Opened by mikejhuang almost 2 years ago
- 1 comment
#2658 - Ticket/PSB-13: Pika validation of VBO data release
Pull Request -
State: closed - Opened by morriscb almost 2 years ago
- 3 comments
#2657 - Slow loading of Visual Behaviour Npixels data
Issue -
State: closed - Opened by seankmartin almost 2 years ago
- 2 comments
Labels: question
#2656 - Reproduce VBO functional clustering results
Issue -
State: closed - Opened by matchings almost 2 years ago
- 1 comment
#2655 - X,Y coordinate flip in receptive_field_mapping.fit_2d_gaussian
Issue -
State: closed - Opened by michaheilbron almost 2 years ago
Labels: bug
#2654 - Error-when using session.stimulus_presentations #2637 not solved
Issue -
State: closed - Opened by mariakesa almost 2 years ago
- 1 comment
Labels: bug
#2653 - Can't download experiment files from Neuropixels Brain Observatory
Issue -
State: closed - Opened by mariakesa almost 2 years ago
- 2 comments
Labels: bug
#2652 - rc/2.15.1: HOTFIX
Pull Request -
State: closed - Opened by morriscb almost 2 years ago
- 2 comments
#2651 - Violation of SWC spec in at least three files
Issue -
State: closed - Opened by patrick-nicodemus almost 2 years ago
- 1 comment
Labels: bug