Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / AllenCellModeling/napari-aicsimageio issues and pull requests

#84 - napari-aicsimage fails to read digital micrograph dm4 files

Issue - State: open - Opened by ialxn about 1 month ago - 1 comment

#83 - Trying to open a .rcpnl file with this plugin and Napri closes

Issue - State: open - Opened by bluesupermn4 about 1 month ago - 2 comments

#82 - Fresh install - closes with unexpected warning under MacOS

Issue - State: open - Opened by horsto 3 months ago - 6 comments

#81 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: open - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#80 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#79 - Different .czi image metadata for conda vs pip install

Issue - State: open - Opened by K-Meech 12 months ago - 6 comments

#78 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#77 - aics-imageio fails to open .tif files

Issue - State: open - Opened by thawn over 1 year ago - 4 comments

#76 - Issue with libxml2=2.11.4 on Windows

Issue - State: open - Opened by haesleinhuepf over 1 year ago - 1 comment

#75 - Problem when reading tiff. Issue related with the `aicsimageio[all]` bug

Issue - State: open - Opened by jplumail over 1 year ago - 1 comment
Labels: bug

#74 - SVS image does not load

Issue - State: closed - Opened by ihnorton over 1 year ago - 19 comments

#73 - Implement SearchableTreeWidget for Metadata

Issue - State: open - Opened by evamaxfield over 1 year ago - 1 comment
Labels: enhancement, good first issue, help wanted

#72 - Documentation/Clarify-bioformats-requires-java-and-mvn

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 2 comments

#71 - feature/add-checkbox-for-mosaic-merge

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 2 comments

#70 - Admin/bump-isort-version-to-fix-lint-CI-failure

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 1 comment

#69 - bugfix/use-data.data-in-open_scene

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 4 comments

#68 - Admin: lint test on PR complains about >79 but black checks for 88.

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago - 1 comment

#67 - Bugfix: make Scene Management widget closable (settings persist)

Pull Request - State: open - Opened by psobolewskiPhD about 2 years ago - 3 comments

#65 - Getting image scale from napari viewer

Issue - State: closed - Opened by christinab12 about 2 years ago - 4 comments

#64 - Admin: Update flake8 because of flake8-pyprojecttoml

Pull Request - State: closed - Opened by psobolewskiPhD about 2 years ago - 2 comments

#63 - Feature: a widget for setting Reader settings

Pull Request - State: open - Opened by psobolewskiPhD about 2 years ago - 16 comments

#62 - Updated Citation

Issue - State: closed - Opened by evamaxfield about 2 years ago - 3 comments

#61 - Support for loading images as a stack

Issue - State: open - Opened by MosGeo over 2 years ago
Labels: enhancement

#60 - Bugfix: Check the squeezed data for scale vals

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 2 comments

#59 - Bugfix: Fix napari-plugin-check version

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 2 comments

#58 - Use filename if single scene & no scene name

Pull Request - State: closed - Opened by psobolewskiPhD over 2 years ago - 3 comments

#57 - Layer names

Issue - State: closed - Opened by MosGeo over 2 years ago - 1 comment

#56 - Data standardization to AICSImage

Issue - State: open - Opened by MosGeo over 2 years ago

#55 - broken with recent aicsimageio release

Issue - State: closed - Opened by tlambert03 over 2 years ago - 3 comments

#54 - Problem with reading 2D dataset - Scale vector of length 3 to 2d data

Issue - State: closed - Opened by sebi06 over 2 years ago - 5 comments

#53 - current sdist broken :/ lacking manifest

Issue - State: closed - Opened by tlambert03 over 2 years ago - 3 comments

#52 - build/use-setuptools-scm-for-versioning

Pull Request - State: closed - Opened by tlambert03 over 2 years ago - 4 comments

#51 - use pyproject.toml ... modernize build

Pull Request - State: closed - Opened by tlambert03 over 2 years ago - 2 comments

#50 - feature/cleanup-np2

Pull Request - State: closed - Opened by evamaxfield over 2 years ago
Labels: documentation, enhancement

#49 - feature/convert-to-npe2

Pull Request - State: closed - Opened by tlambert03 over 2 years ago - 2 comments

#48 - mention conda in installation instructions

Pull Request - State: closed - Opened by haesleinhuepf over 2 years ago - 2 comments

#47 - Installation using pip on Windows fails; but conda works

Issue - State: closed - Opened by haesleinhuepf over 2 years ago - 20 comments

#46 - .ims (Bioformats supported) file type not loaded

Issue - State: closed - Opened by thanushipeiris over 2 years ago - 21 comments

#44 - admin/bump-min-aicsimageio-to-resolve-czi-physical-pixel-sizes

Pull Request - State: closed - Opened by evamaxfield over 2 years ago - 1 comment
Labels: bug

#43 - feature/store-access-to-aicsimage-and-raw-meta-in-layer-meta

Pull Request - State: closed - Opened by evamaxfield almost 3 years ago - 18 comments
Labels: enhancement

#42 - bugfix/windows-build-main-yml-matrix

Pull Request - State: closed - Opened by psobolewskiPhD almost 3 years ago - 1 comment

#41 - bugfix/windows-tests-fix

Pull Request - State: closed - Opened by psobolewskiPhD almost 3 years ago - 3 comments

#40 - Fix windows tests

Issue - State: closed - Opened by evamaxfield almost 3 years ago - 1 comment
Labels: bug, help wanted

#39 - Error when opening multi-file OME.TIF (from micro-manager)

Issue - State: closed - Opened by haesleinhuepf almost 3 years ago - 4 comments

#38 - grammar fix in readme

Pull Request - State: closed - Opened by ianhi about 3 years ago

#37 - Force napari to always use aicsimageio

Issue - State: closed - Opened by MosGeo about 3 years ago - 20 comments

#36 - admin/update-min-aicsimageio-ver-and-move-to-gpl3

Pull Request - State: closed - Opened by evamaxfield about 3 years ago - 11 comments
Labels: documentation

#35 - Discussion: license changes

Issue - State: closed - Opened by evamaxfield about 3 years ago - 3 comments
Labels: documentation

#34 - consider loading first scene by default in scene widget

Issue - State: open - Opened by tlambert03 about 3 years ago - 12 comments

#33 - Add writer params and function to widget

Issue - State: open - Opened by evamaxfield about 3 years ago - 3 comments
Labels: enhancement

#32 - bugfix/squeeze-extra-dims

Pull Request - State: closed - Opened by evamaxfield about 3 years ago - 5 comments
Labels: bug

#31 - admin/make-script-for-downloading-test-resource-use-cache

Pull Request - State: closed - Opened by sir-sigurd about 3 years ago - 3 comments

#30 - admin/update-deps-and-fix-linux-tests

Pull Request - State: closed - Opened by evamaxfield about 3 years ago - 1 comment
Labels: bug, documentation

#29 - Add checkbox for load scene in memory or delayed

Issue - State: open - Opened by evamaxfield about 3 years ago - 7 comments
Labels: enhancement, help wanted

#28 - Add "chunk dims" text field for load state chunk dims

Issue - State: open - Opened by evamaxfield about 3 years ago
Labels: enhancement, help wanted

#27 - feature/scene-widget-additions

Pull Request - State: closed - Opened by evamaxfield about 3 years ago - 11 comments
Labels: enhancement

#26 - admin/default-to-only-ome-supported files-and-reduce-test-files

Pull Request - State: closed - Opened by evamaxfield about 3 years ago - 1 comment
Labels: documentation

#25 - feature/add-scene-selection-widget

Pull Request - State: closed - Opened by psobolewskiPhD about 3 years ago - 31 comments

#24 - Empty dims when importing TIFF, LIF (vs say CZI)

Issue - State: closed - Opened by psobolewskiPhD about 3 years ago - 7 comments

#23 - Meta issue: More robust method for downloading test resources

Issue - State: closed - Opened by psobolewskiPhD about 3 years ago - 4 comments

#22 - Blank image with Light napari theme

Issue - State: closed - Opened by psobolewskiPhD about 3 years ago - 2 comments

#20 - feature/use-physical-pixel-size-for-scales

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: enhancement

#19 - admin/prepare-for-ome-types-deprecation

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: enhancement

#18 - Handle `ome-types` plugin changes

Issue - State: closed - Opened by evamaxfield over 3 years ago
Labels: bug

#17 - bugfix/remote-read-from-http

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 3 comments
Labels: bug, enhancement

#16 - Error while opening image via HTTPS

Issue - State: closed - Opened by haesleinhuepf over 3 years ago - 1 comment

#15 - change metadata back to dict

Pull Request - State: closed - Opened by tlambert03 over 3 years ago - 3 comments
Labels: bug, enhancement

#14 - feature/update-to-support-4.0

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: documentation, enhancement

#13 - Error while enabling the Plugin in Napari

Issue - State: closed - Opened by MalteMederacke over 3 years ago - 5 comments

#12 - admin/build-py39

Pull Request - State: closed - Opened by evamaxfield almost 4 years ago
Labels: enhancement

#11 - Build & Test on Py39

Issue - State: closed - Opened by evamaxfield almost 4 years ago
Labels: enhancement

#10 - bugfix/remove-dask-process-created-viewers

Pull Request - State: closed - Opened by evamaxfield almost 4 years ago
Labels: bug, documentation, enhancement

#9 - Load all channels into the same image layer

Issue - State: closed - Opened by gatordevin almost 4 years ago - 2 comments
Labels: enhancement, help wanted, low priority

#8 - Opening CZI Opens Multiple Windows

Issue - State: closed - Opened by gatordevin almost 4 years ago - 25 comments
Labels: bug

#7 - bugfix/fix-channel-axis-no-label

Pull Request - State: closed - Opened by evamaxfield over 4 years ago

#6 - Implement writer hooks

Issue - State: open - Opened by evamaxfield over 4 years ago
Labels: enhancement

#5 - bugfix/fix-channel-axis-misalligned-iterable

Pull Request - State: closed - Opened by evamaxfield over 4 years ago
Labels: bug

#4 - admin/update-from-cookiecutter

Pull Request - State: closed - Opened by evamaxfield over 4 years ago

#3 - feature/display-first-channel

Pull Request - State: closed - Opened by evamaxfield over 4 years ago
Labels: enhancement

#2 - Cool! and a question

Issue - State: closed - Opened by tlambert03 over 4 years ago - 15 comments
Labels: enhancement

#1 - feature/initial-release

Pull Request - State: closed - Opened by evamaxfield over 4 years ago - 5 comments
Labels: enhancement