Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / AllenCellModeling/aicspylibczi issues and pull requests

#125 - use myst_parser instead of m2r2

Pull Request - State: closed - Opened by toloudis 2 months ago

#124 - Update libCZI and fix shape error

Pull Request - State: closed - Opened by toloudis 3 months ago - 1 comment

#122 - update pypi publish step for trusted publishing

Pull Request - State: closed - Opened by toloudis 7 months ago

#120 - manylinux centos 7 end of life

Issue - State: closed - Opened by toloudis 7 months ago - 1 comment

#119 - Failure to get czi data with imperfect metadata

Issue - State: open - Opened by osthomas 8 months ago

#118 - Fix build and clean up warnings

Pull Request - State: closed - Opened by toloudis 8 months ago

#117 - Build and publish wheels for python3.12

Issue - State: closed - Opened by pe224 9 months ago - 2 comments

#116 - update cibuildwheel to fix windows build

Pull Request - State: closed - Opened by toloudis 10 months ago

#115 - update libczi and actions

Pull Request - State: closed - Opened by toloudis 11 months ago - 1 comment

#114 - Make GPLv3 available in metadata

Pull Request - State: closed - Opened by pgarrison about 1 year ago - 1 comment

#113 - How to export to a TIFF or svs ？

Issue - State: closed - Opened by shenxiaochenn over 1 year ago - 1 comment

#112 - Fix/sdist

Pull Request - State: closed - Opened by toloudis almost 2 years ago - 1 comment

#111 - fixing pip install

Pull Request - State: closed - Opened by toloudis almost 2 years ago - 1 comment

#110 - updates: python 3.11, new libczi

Pull Request - State: closed - Opened by toloudis almost 2 years ago - 1 comment

#109 - does not work with fsspec's LocalFileOpener

Issue - State: open - Opened by toloudis over 2 years ago

#108 - CZI without channel name cannot be read from aicsimageio / aicspylibczi

Issue - State: closed - Opened by sebi06 over 2 years ago - 1 comment

#107 - Add package metadata to help pip install valid versions

Issue - State: closed - Opened by NSGregory over 2 years ago - 6 comments

#106 - Usage of libCZIrw instead of libCZI for aicsimageio

Issue - State: closed - Opened by sebi06 over 2 years ago - 12 comments

#105 - Get pixel depth ?

Issue - State: closed - Opened by ExtReMLapin almost 3 years ago - 1 comment

#104 - admin/set-license-to-GPLv3

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 1 comment

#103 - add python 3.10

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#102 - add arm64 macos build

Pull Request - State: closed - Opened by ianhi about 3 years ago - 18 comments

#101 - Error loading file on M1 Mac

Issue - State: closed - Opened by emay2022 about 3 years ago - 40 comments
Labels: bug, admin

#100 - [Security] Workflow PublishLinux.yml is using vulnerable action actions/checkout

Issue - State: open - Opened by Ale0x78 about 3 years ago - 2 comments

#99 - use m2r2 instead of deprecated m2r

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#98 - fix build error related to eigen in libczi

Pull Request - State: closed - Opened by toloudis about 3 years ago - 5 comments

#97 - Fix/crash when no subblocks

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#96 - fix googletest sub repo issue

Pull Request - State: closed - Opened by toloudis about 3 years ago - 1 comment

#95 - Fix issue #92: Add an optional background_color parameter to read_mosaic

Pull Request - State: closed - Opened by jpcornil-git over 3 years ago - 5 comments
Labels: bug

#94 - Fix/linux wheel needs zlib

Pull Request - State: closed - Opened by toloudis over 3 years ago - 1 comment

#93 - Feature/update libczi

Pull Request - State: closed - Opened by toloudis over 3 years ago - 1 comment

#92 - Unexpected image data from read_mosaic

Issue - State: closed - Opened by erikogabrielsson over 3 years ago - 11 comments

#91 - py::module_local() missing in bindings

Issue - State: open - Opened by DaniGodin over 3 years ago

#90 - Add CMakeLists.txt (etc...) to sdist

Issue - State: open - Opened by tlambert03 over 3 years ago - 3 comments

#89 - feature/simplify-build

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: admin

#88 - Major Update of libCZI will take place soon

Issue - State: closed - Opened by sebi06 over 3 years ago - 9 comments

#87 - Underspecified Coordinates when trying to get TileBoundingBox

Issue - State: closed - Opened by sebi06 over 3 years ago - 4 comments

#86 - contributing.md still says to do a PR on stable branch

Issue - State: closed - Opened by toloudis over 3 years ago - 1 comment

#85 - Bring in bug fix from libCZI

Pull Request - State: closed - Opened by toloudis over 3 years ago - 1 comment

#84 - Corrupted few columns of CZI file with 4.0.0

Issue - State: closed - Opened by boazmohar over 3 years ago - 18 comments
Labels: bug

#83 - Unsure if extra scene in file or sub-block attachment

Issue - State: open - Opened by evamaxfield over 3 years ago - 5 comments
Labels: question

#82 - No matching distribution found for aicspylibczi

Issue - State: closed - Opened by axeldeto over 3 years ago - 3 comments
Labels: admin

#81 - reading in raw lightsheet data (CZI file)

Issue - State: closed - Opened by pr4deepr almost 4 years ago - 21 comments

#80 - Feature/fsspec

Pull Request - State: closed - Opened by heeler almost 4 years ago

#79 - Feature/replace lxml with xml

Pull Request - State: closed - Opened by heeler almost 4 years ago - 7 comments

#78 - admin/update-build-infra

Pull Request - State: closed - Opened by evamaxfield almost 4 years ago - 2 comments
Labels: enhancement, admin

#76 - Feature/py function names

Pull Request - State: closed - Opened by heeler almost 4 years ago - 3 comments

#75 - Feature/3 0 samples

Pull Request - State: closed - Opened by heeler almost 4 years ago - 1 comment

#74 - Update/submodules

Pull Request - State: closed - Opened by heeler almost 4 years ago

#73 - Use of keyword "use_pylibczi" for the CZI file object

Issue - State: closed - Opened by sebi06 about 4 years ago - 3 comments

#72 - Bugfix/bgr skew

Pull Request - State: closed - Opened by heeler about 4 years ago - 1 comment

#71 - Displaying an RGB Image

Issue - State: closed - Opened by MosGeo about 4 years ago - 8 comments

#70 - "free(): invalid size" crash trying to call CziFile.read_mosaic()

Issue - State: open - Opened by markemus about 4 years ago - 22 comments

#69 - CZIs without Scene

Pull Request - State: closed - Opened by heeler about 4 years ago - 1 comment

#68 - ERROR: no matching distribution found for aicspylibczi

Issue - State: closed - Opened by bryantChhun about 4 years ago - 11 comments

#67 - Coordinates Overspecified Exception with certain Mosaic files

Issue - State: closed - Opened by dimi-huer about 4 years ago

#65 - Reading parts of a CZI using BoundingBox derived from czi.mosaic_scene_bounding_boxes

Issue - State: closed - Opened by sebi06 about 4 years ago - 8 comments

#64 - updated to use 3.9

Pull Request - State: closed - Opened by heeler about 4 years ago

#63 - Build & Test on Py39

Issue - State: closed - Opened by evamaxfield about 4 years ago - 1 comment
Labels: admin

#62 - Mosaic image size differs from mosaic dimentions

Issue - State: closed - Opened by plankter about 4 years ago - 11 comments
Labels: bug

#61 - aicspylibczi 3.0 release plans

Issue - State: open - Opened by heeler about 4 years ago
Labels: admin

#60 - fixed a skew on mosaic images

Pull Request - State: closed - Opened by heeler about 4 years ago

#59 - force cores to be a valid number

Pull Request - State: closed - Opened by heeler about 4 years ago

#58 - Bugfix/read mosaic

Pull Request - State: closed - Opened by heeler about 4 years ago - 1 comment

#57 - MemoryError: std::bad_alloc for read_mosaic in versions > 2.6.0

Issue - State: closed - Opened by djdt about 4 years ago - 8 comments

#56 - bugfix/order patch

Pull Request - State: closed - Opened by heeler about 4 years ago - 3 comments

#55 - Tmp/release

Pull Request - State: closed - Opened by heeler over 4 years ago - 1 comment

#54 - Tmp/release

Pull Request - State: closed - Opened by heeler over 4 years ago - 1 comment

#53 - Tmp/release

Pull Request - State: closed - Opened by heeler over 4 years ago - 1 comment

#52 - Update/submodule uri

Pull Request - State: closed - Opened by heeler over 4 years ago - 1 comment

#51 - Feature/msbb

Pull Request - State: closed - Opened by heeler over 4 years ago - 7 comments

#50 - Feature/mosaic scene bounding boxes

Pull Request - State: closed - Opened by heeler over 4 years ago

#49 - Mosaic scene_bounding_box returns incorrect width and height.

Issue - State: closed - Opened by djdt over 4 years ago - 10 comments

#48 - Issue with output = czi.read_image(S=0, C=0)

Issue - State: closed - Opened by sebi06 over 4 years ago - 7 comments

#47 - Problems with czi.size = (-1, -1, -1, -1, -1, -1) for multi-scence CZI

Issue - State: closed - Opened by sebi06 over 4 years ago - 2 comments

#46 - Feature/threadpool

Pull Request - State: closed - Opened by heeler over 4 years ago - 6 comments

#45 - Wrong czi.dims order or misunderstanding (or wrong expectation) from my side

Issue - State: closed - Opened by sebi06 over 4 years ago - 2 comments

#44 - Bugfix/speed

Pull Request - State: closed - Opened by heeler over 4 years ago - 3 comments

#43 - updated readme to mention windows limitations

Pull Request - State: closed - Opened by heeler over 4 years ago

#42 - Fix lint checks in GitHub actions

Issue - State: closed - Opened by evamaxfield over 4 years ago - 1 comment

#41 - Set `czi_filename` in the CziFile constructor

Pull Request - State: closed - Opened by ChiliJohnson almost 5 years ago - 3 comments

#40 - Support for CZI attachments

Issue - State: open - Opened by ChiliJohnson almost 5 years ago - 3 comments
Labels: enhancement

#39 - Feature/multichannel bgr

Pull Request - State: closed - Opened by heeler almost 5 years ago

#38 - Bounding box of tiles

Pull Request - State: closed - Opened by MNimmer48 almost 5 years ago - 5 comments

#37 - Feature/unified xml

Pull Request - State: closed - Opened by heeler almost 5 years ago - 2 comments

#36 - add a separate BGR reader

Issue - State: closed - Opened by heeler almost 5 years ago - 5 comments

#35 - Bugfix/specific mindex

Pull Request - State: closed - Opened by heeler almost 5 years ago - 2 comments

#34 - read selected mosaic tile frames

Issue - State: closed - Opened by heeler almost 5 years ago

#33 - fix scene index in range check

Pull Request - State: closed - Opened by toloudis almost 5 years ago

#32 - Feature/builds

Pull Request - State: closed - Opened by heeler about 5 years ago - 1 comment

#31 - Release Python 3.6 and 3.8 builds

Issue - State: closed - Opened by evamaxfield about 5 years ago - 1 comment
Labels: enhancement

#29 - Samples with public .czi files

Issue - State: open - Opened by hd016 about 5 years ago
Labels: documentation

#28 - ERROR: No matching distribution found for aicspylibczi

Issue - State: closed - Opened by hd016 about 5 years ago - 2 comments

#27 - Feature/update readme

Pull Request - State: closed - Opened by heeler about 5 years ago - 1 comment

#26 - irregular dims

Issue - State: closed - Opened by heeler about 5 years ago