Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / AllenCellModeling/aicsimageio issues and pull requests

#466 - Quality of Life: Make pip install platform independent

Pull Request - State: closed - Opened by SeanLeRoy over 1 year ago - 4 comments

#465 - Bugfix: Dimension mismatch error + minor test fixes

Pull Request - State: closed - Opened by SeanLeRoy over 1 year ago - 6 comments

#464 - Bugfix: Fix tests not asserting error expected

Pull Request - State: closed - Opened by SeanLeRoy over 1 year ago - 3 comments

#463 - Bugfix/Docs-README-Mention-mvn/maven-requirement-for-bioformats_jar

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago - 2 comments

#462 - OME Zarr metadata files do not have newline characters at the end of files

Issue - State: closed - Opened by galenlynch over 1 year ago - 3 comments

#461 - Fix/build fix ometypes validation

Pull Request - State: closed - Opened by toloudis almost 2 years ago - 2 comments

#460 - Getting all mosaic positions at once

Issue - State: closed - Opened by yfukai almost 2 years ago - 2 comments

#459 - Don't warn when opening ome.tif if bfio is not installed

Issue - State: closed - Opened by anntzer almost 2 years ago - 1 comment

#458 - More descriptive scene index error message.

Pull Request - State: closed - Opened by pgarrison almost 2 years ago - 1 comment

#457 - AICSImageIO fails to open OME-TIFF from Fiji which has type RGB

Issue - State: closed - Opened by sebi06 almost 2 years ago - 1 comment

#456 - feature/add-physical-pixel-size-to-tiff-reader

Pull Request - State: closed - Opened by tlambert03 almost 2 years ago - 5 comments
Labels: enhancement

#455 - bugfix/catch-invalid-XMLAnnotationID

Pull Request - State: closed - Opened by tlambert03 almost 2 years ago - 9 comments

#454 - XMLSchemaValidationError when reading xml/h5 dataset

Issue - State: closed - Opened by grinic almost 2 years ago - 12 comments

#453 - fix/fix_future_warnings

Pull Request - State: closed - Opened by JasonYu1 almost 2 years ago - 6 comments
Labels: enhancement

#451 - .git/objects/pack is huge, consider history rewrite?

Issue - State: closed - Opened by tlambert03 almost 2 years ago - 13 comments

#450 - Process TIFF Tags for Metadata on TiffReader

Issue - State: closed - Opened by evamaxfield almost 2 years ago - 4 comments
Labels: enhancement

#449 - bugfix/Fix `UnboundLocalError` in TiffGlobReader

Pull Request - State: closed - Opened by ianhi almost 2 years ago - 12 comments
Labels: bug

#448 - bugfix/empty-scene-name

Pull Request - State: closed - Opened by LegendLukaz about 2 years ago - 12 comments

#446 - admin/support-py311

Pull Request - State: closed - Opened by evamaxfield about 2 years ago - 9 comments
Labels: admin

#445 - try to handle I the same way as Q coming out of tifffile reading

Pull Request - State: closed - Opened by toloudis about 2 years ago - 1 comment

#444 - installation error on Mac M1

Issue - State: closed - Opened by jxchen01 about 2 years ago - 4 comments

#443 - Setting metadata attributes

Issue - State: closed - Opened by christinab12 about 2 years ago - 2 comments

#442 - add lxml as parser in from_xml calls

Pull Request - State: closed - Opened by colobas about 2 years ago - 5 comments

#441 - czi files with missing data crash with segfault

Issue - State: closed - Opened by tlambert03 about 2 years ago - 2 comments

#440 - admin/citation-update

Pull Request - State: closed - Opened by evamaxfield about 2 years ago - 3 comments
Labels: documentation, admin

#439 - try to update imageio and tests

Pull Request - State: closed - Opened by toloudis about 2 years ago - 3 comments

#438 - fix single dimension index when requested as a returned dim

Pull Request - State: closed - Opened by toloudis about 2 years ago - 5 comments

#437 - fix/position-names-in-nd2-tests

Pull Request - State: closed - Opened by tlambert03 about 2 years ago - 1 comment

#436 - Default tiff reader missing planes (with specific file)

Issue - State: closed - Opened by tlambert03 about 2 years ago - 3 comments

#435 - Impossible to import dimension with multiple indices

Issue - State: closed - Opened by guiwitz about 2 years ago - 4 comments

#434 - AICSImage Initialization with 6 Dimensions (RGB)

Issue - State: closed - Opened by MosGeo over 2 years ago - 4 comments

#431 - Update fsspec dependency to have a hard requirement on >= 2022.8.1

Issue - State: closed - Opened by psobolewskiPhD over 2 years ago - 6 comments

#430 - can't open valid scene from czi file

Issue - State: closed - Opened by cfrick13 over 2 years ago - 8 comments

#428 - SLDY file format reader

Issue - State: closed - Opened by toloudis over 2 years ago - 4 comments

#420 - surfacing issues during `determine_reader` and `is_supported_image`

Issue - State: closed - Opened by tlambert03 over 2 years ago - 6 comments

#409 - allow efficient sub-xy tile reads for TIFF

Issue - State: closed - Opened by toloudis over 2 years ago - 1 comment
Labels: Stale

#396 - feature/tiledtiffwriter

Pull Request - State: closed - Opened by Nicholas-Schaub over 2 years ago - 10 comments
Labels: enhancement

#395 - Transpose dims to OME standard as a part of normal OME-TIFF writing options

Issue - State: closed - Opened by evamaxfield over 2 years ago - 5 comments
Labels: enhancement, good first issue, Stale

#394 - Weird reshaping corner case

Issue - State: closed - Opened by colobas over 2 years ago - 19 comments
Labels: bug, good first issue

#391 - ValueError: shape mismatch

Issue - State: closed - Opened by jo-mueller over 2 years ago - 5 comments

#386 - Writers streaming as data comes in

Issue - State: closed - Opened by ianhi over 2 years ago - 7 comments
Labels: Stale

#383 - Try out m2stitch for general mosaic tile stitching

Issue - State: closed - Opened by evamaxfield almost 3 years ago - 6 comments
Labels: enhancement, help wanted, discussion, Stale

#381 - feature/zarrwriter

Pull Request - State: closed - Opened by toloudis almost 3 years ago - 3 comments

#361 - imageio 2.11+ breaks tests

Issue - State: closed - Opened by MatteBailey about 3 years ago - 11 comments

#356 - Image Format Readers as Plugins

Issue - State: closed - Opened by toloudis about 3 years ago - 6 comments

#349 - Process more tiff tags

Issue - State: closed - Opened by ianhi about 3 years ago - 2 comments

#348 - Move `lint` action to pre-commit.ci

Issue - State: closed - Opened by ianhi about 3 years ago - 2 comments
Labels: documentation, enhancement, admin, Stale

#344 - Ability to standardize aicsimageio output to 6D

Issue - State: closed - Opened by MosGeo about 3 years ago - 2 comments
Labels: Stale

#330 - Standardize storage / path management of provided `image` parameter

Issue - State: closed - Opened by evamaxfield about 3 years ago - 1 comment
Labels: enhancement, discussion, Stale

#312 - anaconda distro

Issue - State: closed - Opened by toloudis about 3 years ago - 29 comments

#301 - Conversion from CZI to OME TIFF

Issue - State: closed - Opened by MosGeo over 3 years ago - 21 comments
Labels: enhancement

#300 - feature/ome-metadata-in-save

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment

#298 - Doc fix: update advice regarding scene iteration

Issue - State: closed - Opened by GabeMedrash over 3 years ago - 1 comment
Labels: documentation, good first issue, admin, Stale

#291 - Mosaic image dimension missmatch

Issue - State: closed - Opened by jo-mueller over 3 years ago - 6 comments
Labels: bug

#282 - AICSImage CZI images is Slow (infinite?) processing compared to CZIReader

Issue - State: closed - Opened by MosGeo over 3 years ago - 3 comments

#281 - Optimization of default chunk_dims if not explicitely provided

Issue - State: closed - Opened by evamaxfield over 3 years ago - 5 comments
Labels: enhancement, Stale

#278 - Mosaic merge of LIF

Issue - State: closed - Opened by psobolewskiPhD over 3 years ago - 6 comments
Labels: bug

#274 - CZI tile stitching takes several minutes to complete

Issue - State: closed - Opened by rcasero over 3 years ago - 11 comments
Labels: documentation, enhancement, discussion, Stale

#262 - function to convert Zeiss .czi files to DeepZoom .dzi using aicsimageio and pyvips

Issue - State: closed - Opened by rcasero over 3 years ago - 5 comments
Labels: Stale

#256 - docs/add-missing-czi-reading-to-mosaic-support

Pull Request - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: documentation

#241 - docs: word wrap not working on Methods and Attributes in the published docs on github pages

Issue - State: closed - Opened by toloudis over 3 years ago - 1 comment
Labels: documentation, good first issue, admin, Stale

#228 - Pyramid + Tiled SVS (TIFF) Reading

Issue - State: closed - Opened by folterj over 3 years ago - 15 comments
Labels: documentation, enhancement, Stale

#227 - Remote reading "determine_reader" optimization

Issue - State: closed - Opened by evamaxfield over 3 years ago - 3 comments
Labels: enhancement, good first issue, low priority, Stale

#223 - Better (and more) Benchmarks

Issue - State: closed - Opened by evamaxfield over 3 years ago - 2 comments
Labels: documentation, help wanted, discussion, admin, Stale

#222 - 3i Slidebook Reader

Issue - State: closed - Opened by evamaxfield over 3 years ago - 15 comments
Labels: enhancement, help wanted, discussion

#214 - 4.x Write tiff planes per dask chunk

Issue - State: closed - Opened by evamaxfield over 3 years ago - 1 comment
Labels: enhancement, help wanted, Stale

#209 - Application crashes when trying to read the shape of a CZI file with WinError 10054

Issue - State: closed - Opened by sebi06 almost 4 years ago - 6 comments
Labels: bug, Stale

#205 - Add tests for remote writing

Issue - State: closed - Opened by evamaxfield almost 4 years ago - 2 comments
Labels: enhancement, admin

#196 - micro-manager 2.0 gamma reader

Issue - State: closed - Opened by bryantChhun almost 4 years ago - 4 comments
Labels: enhancement, help wanted, discussion, Stale

#192 - Create `OmeZarrWriter`

Issue - State: closed - Opened by evamaxfield almost 4 years ago
Labels: enhancement, help wanted, good first issue

#191 - Create `OmeZarrReader`

Issue - State: closed - Opened by evamaxfield almost 4 years ago - 1 comment
Labels: enhancement, help wanted, good first issue

#189 - Create `ZarrReader`

Issue - State: closed - Opened by evamaxfield almost 4 years ago - 1 comment
Labels: enhancement, help wanted, good first issue

#175 - File Format Questions + General 4.1 Planning

Issue - State: closed - Opened by evamaxfield almost 4 years ago - 22 comments
Labels: admin, Stale

#166 - Expand TiffGlobReader API to work for all file formats

Issue - State: closed - Opened by evamaxfield about 4 years ago - 13 comments
Labels: enhancement, discussion, Stale

#158 - Potential for logo / icon for the project

Issue - State: closed - Opened by evamaxfield about 4 years ago - 1 comment
Labels: documentation, admin, Stale

#140 - Support Reading and Writing of Pyramidal Formats

Issue - State: closed - Opened by evamaxfield over 4 years ago - 12 comments
Labels: enhancement, Stale

#125 - Admin: Migrate repo to AllenCell

Issue - State: closed - Opened by evamaxfield over 4 years ago - 2 comments
Labels: admin, Stale