Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / AllenCellModeling/aicsimageio issues and pull requests
#559 - Readme link to writer docs 404s from inside github
Issue -
State: open - Opened by JulianoGianlupi 21 days ago
#558 - Extract Physical Pixel Size from SEM TIFF metadata.
Issue -
State: open - Opened by gyger about 1 month ago
- 1 comment
#556 - Documentation/typo in dim_order documentation
Pull Request -
State: open - Opened by alanocallaghan 4 months ago
#555 - tifffile dependency: version pin outdated?
Issue -
State: closed - Opened by m-albert 4 months ago
- 4 comments
#554 - Importing fails
Issue -
State: closed - Opened by onurserce 4 months ago
- 2 comments
#553 - Questions regarding compression method choice with OmeTiffWriter.save()
Issue -
State: open - Opened by AlanWu886 5 months ago
- 2 comments
#552 - Remove ceiling on dependencies
Issue -
State: open - Opened by joshua-gould 5 months ago
#551 - add doc for ome zarr writer
Pull Request -
State: open - Opened by jackyko1991 5 months ago
#550 - Large timing overhead on TiffReader
Issue -
State: open - Opened by Armavica 6 months ago
- 6 comments
#549 - TimeStamps
Issue -
State: open - Opened by ant-trullo 6 months ago
#548 - Move test resources to new bucket
Pull Request -
State: closed - Opened by SeanLeRoy 7 months ago
#547 - Bugfix/Bfio unpin tifffile
Pull Request -
State: closed - Opened by jplumail 7 months ago
- 1 comment
#546 - Allow more channels in metadata than in data
Pull Request -
State: closed - Opened by SeanLeRoy 7 months ago
- 1 comment
#545 - support cache file system
Pull Request -
State: open - Opened by joshua-gould 8 months ago
- 1 comment
#543 - Remove ceiling on Pillow; adjust default reader expectations
Pull Request -
State: closed - Opened by SeanLeRoy 8 months ago
- 2 comments
#542 - Try newest imageio
Pull Request -
State: closed - Opened by SeanLeRoy 8 months ago
- 1 comment
#541 - main[base-imageio] failing due to Pillow
Issue -
State: closed - Opened by SeanLeRoy 8 months ago
#540 - Move test files out of old modeling AWS account
Issue -
State: open - Opened by SeanLeRoy 8 months ago
#539 - Specify resolution level for reading OME-Zarr
Issue -
State: closed - Opened by tischi 8 months ago
- 6 comments
#538 - Move off Node12
Pull Request -
State: closed - Opened by SeanLeRoy 8 months ago
- 1 comment
#537 - Adjust bfio & fsspec versions to avoid bugs
Pull Request -
State: closed - Opened by SeanLeRoy 8 months ago
- 1 comment
#536 - Limit fsspec version for now due to glob bug
Pull Request -
State: closed - Opened by SeanLeRoy 9 months ago
- 1 comment
#535 - Adjust pydantic import
Pull Request -
State: closed - Opened by SeanLeRoy 9 months ago
- 1 comment
#534 - pydantic user warning on import
Issue -
State: closed - Opened by winnubstj 9 months ago
#533 - Feature/nd2reader-xarray-ome-metadata
Pull Request -
State: closed - Opened by yichechang 9 months ago
- 18 comments
#532 - czi number of channels can be out of sync and is reported as error
Issue -
State: closed - Opened by toloudis 10 months ago
- 2 comments
Labels: bug
#531 - test - ignore this
Pull Request -
State: closed - Opened by SeanLeRoy 10 months ago
#530 - Drop py3.8 support; upgrade dependencies to support new min py
Pull Request -
State: closed - Opened by SeanLeRoy 11 months ago
- 1 comment
#529 - Revert to pre-2023.3.15 tifffile to avoid mm_stack issue
Pull Request -
State: closed - Opened by SeanLeRoy 11 months ago
- 1 comment
#528 - Fix publish task according to pypi rec for 2fa accounts
Pull Request -
State: closed - Opened by SeanLeRoy 11 months ago
- 2 comments
#527 - Limit numpy and dask
Pull Request -
State: closed - Opened by SeanLeRoy 11 months ago
- 1 comment
#526 - current dask no longer supports Python 3.8
Issue -
State: closed - Opened by toloudis 11 months ago
#525 - update gh-actions to fix warnings about deprecated node12 actions
Issue -
State: closed - Opened by toloudis 11 months ago
#524 - ome_metadata fro czi file
Issue -
State: closed - Opened by TomPJWyatt 12 months ago
- 10 comments
#523 - tifffile min version incorrect, and now incompatible with bfio extra
Issue -
State: closed - Opened by tlambert03 12 months ago
- 6 comments
#522 - DependencyFix/Upgrade ome-types to 0.3.4
Pull Request -
State: closed - Opened by Armavica 12 months ago
- 14 comments
#521 - Feature/ome_metadata-for-nd2
Pull Request -
State: closed - Opened by tlambert03 12 months ago
- 3 comments
#520 - `Dimensions` typing
Issue -
State: closed - Opened by multimeric 12 months ago
- 2 comments
#519 - Feature/OmeZarr Chunk Dims
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 2 comments
#518 - Latest version of aicsimageio cannot read some czi images
Issue -
State: closed - Opened by christinab12 about 1 year ago
- 5 comments
Labels: duplicate, third party dependency
#517 - same Example_FLIM.lif has 32 bit images in it that aicsimageio cannot read
Issue -
State: closed - Opened by ronnkling about 1 year ago
- 3 comments
Labels: third party dependency
#516 - OmeZarrWriter: allow user choice of chunk sizes!
Issue -
State: closed - Opened by toloudis about 1 year ago
#515 - dtype error converting Olympus VSI
Issue -
State: closed - Opened by dyf about 1 year ago
- 8 comments
#514 - Guess dims for missing field 'axes'
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 2 comments
#513 - czi reader is very slow to get channel_names for a large file
Issue -
State: closed - Opened by toloudis about 1 year ago
- 2 comments
#512 - Feature/omezarrreader guess dims
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 1 comment
#511 - LIF image data ordering
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 2 comments
#510 - Admin/OmeZarrReader variable dimension unit tests
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 5 comments
#509 - OmeZarrReader physical_pixel_sizes support
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 1 comment
#508 - channel-z ordering problem when reading lif
Issue -
State: closed - Opened by TomPJWyatt about 1 year ago
- 7 comments
Labels: third party dependency
#507 - Admin/OmeZarrReader redundant test
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 2 comments
#506 - OmeZarrReader physical pixel resolution
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
Labels: enhancement
#505 - OmeZarrReader Performance Benchmarks
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 11 comments
#504 - OmeZarrReader only has "public data or supply your own creds in env"
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 3 comments
#503 - OmeZarrReader dimension guess for absent field 'axes'
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
#502 - OmeZarrReader Test with variable dimensions
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
#501 - OmeZarrReader redundant testfile
Issue -
State: closed - Opened by BrianWhitneyAI about 1 year ago
Labels: admin
#500 - Bugfix/Bfio Tifffile breaks tests
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 2 comments
#499 - Upgrade imageio to prevent bug with Pillow in 2.28.0
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 1 comment
#498 - Ignore missing Position dimension
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 2 comments
#497 - added parser="lxml"
Pull Request -
State: closed - Opened by joshua-gould about 1 year ago
- 2 comments
#496 - Feature/sldy reader
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 2 comments
#495 - Tifffile error when accessing dims attribute
Issue -
State: closed - Opened by jplumail about 1 year ago
- 9 comments
Labels: third party dependency
#494 - Admin: Update deploy process
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 4 comments
#493 - OmeZarrReader
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 6 comments
#492 - store frame metadata when reading a specific scene
Pull Request -
State: closed - Opened by joshua-gould about 1 year ago
- 1 comment
Labels: enhancement
#491 - does not open the latest leica formats for .lif
Issue -
State: closed - Opened by ronnkling about 1 year ago
- 11 comments
#490 - test aics internal nd2 files
Issue -
State: closed - Opened by toloudis about 1 year ago
- 3 comments
#489 - Admin/drop 3.8 support for newest xarray
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 7 comments
#488 - Nikon nd2 file causing error
Issue -
State: closed - Opened by toloudis about 1 year ago
- 3 comments
#487 - Adjusting tiffile versioning
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 4 comments
#486 - Bugfix/slow tile retrieval
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 2 comments
#485 - Feature/tiledtiffwriter
Pull Request -
State: closed - Opened by BrianWhitneyAI about 1 year ago
- 1 comment
#483 - Extract S dim from OME data
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 3 comments
#482 - get_mosaic_tile_position is prohibitively slow
Issue -
State: closed - Opened by toloudis about 1 year ago
- 2 comments
#481 - Restrict xarray version to support py3.8
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 2 comments
#480 - Bugfix/mosaic lif merge error
Pull Request -
State: closed - Opened by SeanLeRoy about 1 year ago
- 1 comment
#479 - aicsimageio uses ome_types in a way that causes the emission of a warning
Issue -
State: closed - Opened by anntzer about 1 year ago
- 3 comments
#478 - try to use optimized codepath through ome-types
Pull Request -
State: closed - Opened by toloudis about 1 year ago
- 1 comment
#477 - Bugfix/empty scene name
Pull Request -
State: closed - Opened by BrianWhitneyAI over 1 year ago
- 1 comment
#476 - Drop py3.8 support for newest xarray version
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 4 comments
#475 - Do something about xarray version issue
Issue -
State: closed - Opened by SeanLeRoy over 1 year ago
- 3 comments
#474 - feature/github-action-stale
Pull Request -
State: closed - Opened by BrianWhitneyAI over 1 year ago
- 2 comments
#473 - Bugfix: Upgrade minimum fsspec version
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 1 comment
#472 - Bugfix: Restrict tifffile version for now
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 3 comments
#471 - Bugfix: unclear warning for missing 'bfio' install.
Pull Request -
State: closed - Opened by BrianWhitneyAI over 1 year ago
- 3 comments
#470 - bugfix: removing 2.11.0 threshold
Pull Request -
State: closed - Opened by BrianWhitneyAI over 1 year ago
- 11 comments
#469 - Test passing without tifffile
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 1 comment
#468 - Bugfix: Avoid FssSpec bug
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 1 comment
#467 - Support reading ome-zarr files
Issue -
State: closed - Opened by joshua-gould over 1 year ago
- 2 comments
#466 - Quality of Life: Make pip install platform independent
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 4 comments
#465 - Bugfix: Dimension mismatch error + minor test fixes
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 6 comments
#464 - Bugfix: Fix tests not asserting error expected
Pull Request -
State: closed - Opened by SeanLeRoy over 1 year ago
- 3 comments
#463 - Bugfix/Docs-README-Mention-mvn/maven-requirement-for-bioformats_jar
Pull Request -
State: closed - Opened by psobolewskiPhD over 1 year ago
- 2 comments
#462 - OME Zarr metadata files do not have newline characters at the end of files
Issue -
State: closed - Opened by galenlynch over 1 year ago
- 3 comments
#461 - Fix/build fix ometypes validation
Pull Request -
State: closed - Opened by toloudis over 1 year ago
- 2 comments
#460 - Getting all mosaic positions at once
Issue -
State: closed - Opened by yfukai over 1 year ago
- 2 comments
#459 - Don't warn when opening ome.tif if bfio is not installed
Issue -
State: closed - Opened by anntzer over 1 year ago
- 1 comment
#458 - More descriptive scene index error message.
Pull Request -
State: closed - Opened by pgarrison over 1 year ago
- 1 comment
#457 - AICSImageIO fails to open OME-TIFF from Fiji which has type RGB
Issue -
State: closed - Opened by sebi06 over 1 year ago
- 1 comment