AlineTalhouk/diceR issues and pull requests

#167 - x-axis k values not sorted properly, relative change in area under cdf curve

Issue - State: closed - Opened by IgnatiusPang about 1 year ago - 2 comments

#166 - consensus_matrix on large scale single cell data

Issue - State: closed - Opened by juechenyang over 1 year ago - 1 comment

#165 - Requesting ability to use p.item argument in dice()

Issue - State: closed - Opened by of2 over 1 year ago

#164 - Is PAC the best way to choose optimal k?

Issue - State: closed - Opened by carcarre11 almost 2 years ago - 2 comments

#163 - bug?

Issue - State: closed - Opened by nobody1999 almost 2 years ago - 1 comment

#162 - Pass seed.data to dice()

Issue - State: closed - Opened by dchiu911 almost 2 years ago
Labels: feature

#161 - Pearson and spearman distance

Issue - State: closed - Opened by tiagochst about 2 years ago

#160 - consensus evaluate add lower and upper PAC bound options

Issue - State: closed - Opened by tiagochst about 2 years ago
Labels: enhancement

#159 - Custom distance measure

Issue - State: closed - Opened by bernard-liew about 2 years ago - 1 comment

#158 - extracting gene list from a specific cluster

Issue - State: closed - Opened by aniketbroad2604 about 2 years ago - 1 comment

#157 - References are missing from software document

Issue - State: closed - Opened by NimaSarajpoor over 2 years ago - 2 comments

#156 - sigclust() not working

Issue - State: open - Opened by melodyng over 2 years ago - 1 comment

#155 - LCA throws error

Issue - State: closed - Opened by JoeDonBonner almost 3 years ago - 1 comment

#154 - 6 algorithms throw errors

Issue - State: closed - Opened by JoeDonBonner almost 3 years ago - 2 comments

#153 - Unable to install diceR on R3.5.x or 4.0.x

Issue - State: closed - Opened by ghidalgo93 almost 3 years ago - 1 comment

#152 - Add block

Pull Request - State: closed - Opened by dchiu911 about 3 years ago

#151 - Code used to generate logo

Issue - State: closed - Opened by dchiu911 over 3 years ago

#150 - Able to use cluster labels from outside diceR?

Issue - State: closed - Opened by jnat5 over 3 years ago - 1 comment

#149 - NMF: error in evaluating the argument 'object' in selecting a method...

Issue - State: closed - Opened by angel-bee2018 over 3 years ago - 1 comment

#148 - cancel the rownames before calling tibble::column_to_rownames()

Pull Request - State: closed - Opened by romainfrancois over 3 years ago - 3 comments

#147 - Number of items to replace is not a multiple of replacement length

Issue - State: closed - Opened by gladnovin about 4 years ago

#146 - Fix tests

Pull Request - State: closed - Opened by dchiu911 about 4 years ago

#145 - Release diceR 1.0.0

Issue - State: closed - Opened by dchiu911 about 4 years ago

#144 - Package was removed from the CRAN

Issue - State: closed - Opened by mikhailsirenko over 4 years ago - 1 comment

#143 - Confused with p-values

Issue - State: closed - Opened by ktroule over 4 years ago - 1 comment

#142 - Parallel consensus_cluster implementation

Pull Request - State: open - Opened by jerryji1993 over 4 years ago

#141 - add LCA algorithm

Pull Request - State: closed - Opened by dchiu911 about 5 years ago

#140 - Fix k-means clustering

Pull Request - State: closed - Opened by dchiu911 about 5 years ago

#139 - stats::kmeans() does not take a distance matrix?

Issue - State: closed - Opened by jerryji1993 about 5 years ago
Labels: bug

#138 - parallelization

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment

#137 - Feature Request/Help: Add Latent Class Analysis as another algorithm?

Issue - State: closed - Opened by ghost over 5 years ago - 3 comments
Labels: feature

#136 - How make cluster ensembles with database iris ?

Issue - State: closed - Opened by alciomarhollanda about 6 years ago - 3 comments

#135 - Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called ‘stringi’

Issue - State: closed - Opened by kyoye over 6 years ago - 1 comment

#134 - inconsistency

Issue - State: closed - Opened by AlineTalhouk over 6 years ago
Labels: bug

#133 - Minor grammar changes and fixing omitted words

Pull Request - State: closed - Opened by JakeNel28 over 6 years ago - 1 comment

#132 - Different area under CDF curve

Issue - State: closed - Opened by TalkingCoffeeMachine over 6 years ago - 4 comments

#131 - diceR::consensus_rank fails with dataframe

Issue - State: closed - Opened by mattpaletta over 6 years ago - 1 comment

#130 - Add function parameter for hclust method

Issue - State: closed - Opened by JakeNel28 over 6 years ago - 3 comments
Labels: feature, Priority: Low

#129 - NMF classes failing

Issue - State: closed - Opened by mattpaletta over 6 years ago - 1 comment

#128 - How to choose which clustering to use as 'reference column' in majority_voting?

Issue - State: closed - Opened by bw4sz over 6 years ago - 4 comments

#127 - "Error in dist calculation" [diceR::dice()]

Issue - State: closed - Opened by Asduveneck over 6 years ago - 4 comments
Labels: bug

#126 - Using diceR for consensus when clustering methods have already been performed.

Issue - State: closed - Opened by bw4sz over 6 years ago - 2 comments
Labels: question

#125 - `save` argument in `consensus_cluster`

Issue - State: closed - Opened by ShanzhaoWang over 6 years ago - 1 comment

#124 - Upgrade nmf

Pull Request - State: closed - Opened by dchiu911 over 6 years ago

#123 - Parallel pipeline

Pull Request - State: closed - Opened by dchiu911 over 6 years ago - 2 comments
Labels: feature

#122 - custom algorithm in consensus_cluster

Issue - State: closed - Opened by phiala almost 7 years ago - 1 comment
Labels: bug, Priority: Medium

#121 - Options for t-SNE and largeVis

Issue - State: closed - Opened by dchiu911 about 7 years ago - 2 comments
Labels: discussion

#120 - Options for HDBSCAN

Issue - State: closed - Opened by dchiu911 about 7 years ago - 6 comments
Labels: discussion

#119 - purrr version on cluster

Issue - State: closed - Opened by dchiu911 about 7 years ago
Labels: question

#118 - Add Algos

Pull Request - State: closed - Opened by Dustin21 about 7 years ago - 6 comments

#117 - Add Algos

Pull Request - State: closed - Opened by Dustin21 about 7 years ago - 3 comments

#116 - rest group ap

Issue - State: closed - Opened by billyhpchen about 7 years ago - 10 comments

#115 - Initial Release

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#114 - DiceR installation issue

Issue - State: closed - Opened by jenj133 over 7 years ago - 4 comments

#113 - Question about Dice function

Issue - State: closed - Opened by jenj133 over 7 years ago - 8 comments
Labels: bug

#112 - Testing installation after adding Rcpp

Issue - State: closed - Opened by dchiu911 over 7 years ago - 1 comment
Labels: help wanted

#111 - review the algorithm ranking portion in the package

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 1 comment

#110 - Bug

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 2 comments
Labels: bug

#109 - Missing packages in consensus_cluster

Issue - State: closed - Opened by jenj133 over 7 years ago - 3 comments

#108 - Instruction inconsistencies

Issue - State: closed - Opened by jenj133 over 7 years ago - 2 comments

#107 - updates to package and documentations

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 4 comments
Labels: task

#106 - Enhancement lintr

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#105 - Bug in the CRAN version of the “devtools” package

Issue - State: closed - Opened by jenj133 over 7 years ago - 9 comments
Labels: bug

#104 - Organize data

Pull Request - State: closed - Opened by dchiu911 over 7 years ago - 1 comment

#103 - Updated pipeline diagram

Issue - State: closed - Opened by dchiu911 over 7 years ago - 4 comments
Labels: task

#102 - Feature update outputs

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#101 - Update outputs

Issue - State: closed - Opened by dchiu911 over 7 years ago
Labels: feature

#100 - Additional methods of choosing k

Pull Request - State: closed - Opened by dchiu911 over 7 years ago - 1 comment

#99 - ERROR with hclust?

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 9 comments

#98 - Additional trimming methods and k-choosing mechanism

Issue - State: closed - Opened by dchiu911 over 7 years ago
Labels: enhancement

#97 - Updates to pkgdown site

Pull Request - State: closed - Opened by dchiu911 over 7 years ago - 1 comment

#96 - Consensus Function LCE

Issue - State: closed - Opened by billyhpchen over 7 years ago - 9 comments
Labels: bug

#95 - Pipe error with NMF

Issue - State: closed - Opened by billyhpchen over 7 years ago - 7 comments

#94 - CSPA modification

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 7 comments
Labels: question

#93 - Enhancement purrr

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#92 - Enhancement purrr

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#91 - impute knn when algorithm fails

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 2 comments
Labels: feature

#90 - dice outputs

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 3 comments
Labels: feature

#89 - Paper options

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 16 comments
Labels: discussion

#88 - Testing with Sigclust

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 2 comments
Labels: discussion

#87 - Silhouette?

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 2 comments
Labels: question

#86 - Initialise pkgdown website for diceR; version bump

Pull Request - State: closed - Opened by dchiu911 over 7 years ago

#85 - New Bug created: Error in get(d) : object 'euclidean' not found

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 11 comments
Labels: discussion

#83 - Bug with LCE

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 1 comment
Labels: bug

#82 - Is something wrong with the consensus functions?

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 9 comments
Labels: discussion

#81 - Bug with graphs from dice

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 6 comments
Labels: bug

#79 - why are we checking if ref.cl is integer?

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 8 comments
Labels: Priority: Low

#78 - prepare_data

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 6 comments
Labels: enhancement

#75 - Evaluation Criteria should be in an array rather than a list

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 4 comments
Labels: enhancement

#74 - Closing issues with commits

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 3 comments
Labels: discussion

#72 - Selection of K

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 8 comments
Labels: discussion

#63 - LCE improvements and profiling

Issue - State: closed - Opened by AlineTalhouk over 7 years ago - 2 comments
Labels: enhancement

#60 - Generate website for package

Issue - State: closed - Opened by dchiu911 over 7 years ago - 9 comments
Labels: enhancement

#59 - Trimming and Reweighing Methods

Issue - State: closed - Opened by dchiu911 over 7 years ago - 3 comments
Labels: discussion

#54 - Feature/dice usage

Pull Request - State: closed - Opened by dchiu911 almost 8 years ago - 1 comment

#52 - tcga data

Issue - State: closed - Opened by liujohnson118 almost 8 years ago - 2 comments
Labels: discussion

#50 - Run Experiments

Issue - State: closed - Opened by dchiu911 almost 8 years ago - 16 comments
Labels: task

#42 - Meet

Issue - State: closed - Opened by AlineTalhouk almost 8 years ago - 2 comments
Labels: discussion

#40 - of a pipeline on gsc

Issue - State: closed - Opened by AlineTalhouk almost 8 years ago - 19 comments
Labels: task

#18 - Framework for hypothesis testing

Issue - State: open - Opened by AlineTalhouk almost 8 years ago - 9 comments
Labels: enhancement

GitHub / AlineTalhouk/diceR issues and pull requests