Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / AlexandrovLab/SigProfilerAssignment issues and pull requests

#50 - Denovo fit of SV signatures

Issue - State: closed - Opened by Avramis about 2 years ago - 1 comment

#49 - Plots4

Pull Request - State: closed - Opened by rvangara about 2 years ago

#48 - import decomp plots from assignment, update MANIFEST, fix column name…

Pull Request - State: closed - Opened by mdbarnesUCSD about 2 years ago - 1 comment

#47 - Fix TMB plot y-axis when using exome parameter

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#46 - Development

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#45 - Add export_probabilities parameter

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#44 - Add subgroups for DBS and ID COSMIC signatures

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#43 - Development

Pull Request - State: closed - Opened by mdbarnesUCSD about 2 years ago

#42 - U8 b

Pull Request - State: closed - Opened by mdbarnesUCSD about 2 years ago

#41 - Decomp mods

Pull Request - State: closed - Opened by mdbarnesUCSD about 2 years ago

#40 - Missing De_Novo_map_to_COSMIC_SBS96.csv

Issue - State: closed - Opened by sudogene about 2 years ago - 1 comment

#39 - U21

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#38 - U21

Pull Request - State: closed - Opened by marcos-diazg about 2 years ago

#37 - COSMIC signature map to every segment

Issue - State: closed - Opened by mawh-SCU about 2 years ago - 1 comment

#36 - COSMIC signature map to every segment

Issue - State: closed - Opened by mawh-SCU about 2 years ago

#35 - Development

Pull Request - State: closed - Opened by rvangara about 2 years ago

#34 - Vcf input integration

Pull Request - State: closed - Opened by rvangara over 2 years ago

#33 - roundConserveSum in single_sample.py

Pull Request - State: closed - Opened by aeverall over 2 years ago - 1 comment

#32 - Development

Pull Request - State: closed - Opened by marcos-diazg over 2 years ago

#31 - U5

Pull Request - State: closed - Opened by marcos-diazg over 2 years ago

#30 - U5

Pull Request - State: closed - Opened by marcos-diazg over 2 years ago

#29 - I132

Pull Request - State: closed - Opened by marcos-diazg over 2 years ago

#28 - Negative exposure edge case

Issue - State: closed - Opened by aeverall over 2 years ago - 1 comment

#27 - Development

Pull Request - State: closed - Opened by mdbarnesUCSD over 2 years ago

#26 - Make consistent MutationType

Pull Request - State: closed - Opened by mdbarnesUCSD over 2 years ago

#25 - upgrade to v0.0.8

Pull Request - State: closed - Opened by rvangara over 2 years ago

#24 - Bugs s#3

Pull Request - State: closed - Opened by rvangara over 2 years ago

#23 - resolve bug_s#2

Pull Request - State: closed - Opened by rvangara over 2 years ago

#21 - Can't reproduce results using the input from supplementary file

Issue - State: closed - Opened by chaos66ren over 2 years ago - 1 comment

#20 - SPA v0.0.7

Pull Request - State: closed - Opened by rvangara over 2 years ago

#19 - SPA v0.0.6

Pull Request - State: closed - Opened by rvangara over 2 years ago

#18 - Missing sample file to show format and order for SBS-TSB192 mutation channels

Issue - State: closed - Opened by WuyangFF95 over 2 years ago - 5 comments

#17 - Documentation

Issue - State: closed - Opened by juberpatel over 2 years ago - 1 comment

#15 - Incorrect reconstruction

Issue - State: closed - Opened by hylkedonker over 2 years ago - 1 comment

#14 - Running Analyze.decompose_fit using custom database not working

Issue - State: closed - Opened by esavage111 over 2 years ago - 1 comment
Labels: Working on it

#13 - fixing bugs extractor linking for different context types

Pull Request - State: closed - Opened by rvangara over 2 years ago

#12 - TCI Support

Pull Request - State: closed - Opened by qasim-at-tci over 2 years ago

#11 - Spespa 3

Pull Request - State: closed - Opened by rvangara over 2 years ago

#10 - Spe 2

Pull Request - State: closed - Opened by rvangara over 2 years ago

#9 - Spe link updates

Pull Request - State: closed - Opened by rvangara over 2 years ago

#8 - Custom dirs

Pull Request - State: closed - Opened by rvangara over 2 years ago

#7 - Add custom dirs in devopts

Pull Request - State: closed - Opened by rvangara over 2 years ago

#6 - SPA Analyzer v0.0.1

Pull Request - State: closed - Opened by rvangara over 2 years ago

#5 - SPA denovo cutoffs update

Pull Request - State: closed - Opened by rvangara over 2 years ago

#4 - SPA v0.0.1

Pull Request - State: closed - Opened by rvangara over 2 years ago

#3 - Fixed bug in cosmic fits in new version

Pull Request - State: closed - Opened by rvangara over 2 years ago

#2 - SigProfilerSingleSamplePro Version 0.0.1

Pull Request - State: closed - Opened by rvangara over 2 years ago

#1 - Minor mods

Pull Request - State: closed - Opened by rvangara almost 3 years ago - 1 comment