AdvancedPhotonSource/tike issues and pull requests

#234 - REF: Use device array instead of two scalars for rescale_probe

Pull Request - State: closed - Opened by carterbox over 2 years ago

#233 - NEW: Add momentum to rpie object update

Pull Request - State: closed - Opened by carterbox over 2 years ago

#232 - NEW: Add penalty for higher modes existing

Pull Request - State: closed - Opened by carterbox over 2 years ago

#231 - BUG: NEW: Some minor changes

Pull Request - State: closed - Opened by carterbox over 2 years ago

#230 - NEW: Simple Multi-grid reconstruction method

Pull Request - State: closed - Opened by carterbox over 2 years ago - 1 comment

#229 - NEW: Optimizations and correctness tests for patch extraction operation

Pull Request - State: closed - Opened by carterbox over 2 years ago

#228 - BLD: Use new scm git archive API

Pull Request - State: closed - Opened by carterbox over 2 years ago

#227 - NEW: Add Lynx dataloader

Pull Request - State: closed - Opened by carterbox over 2 years ago

#226 - TST: Add units tests for direct comparison with matlab

Pull Request - State: open - Opened by carterbox over 2 years ago

#225 - Smooth variable weights

Pull Request - State: open - Opened by carterbox over 2 years ago

#224 - TST: Refactor MPI enabled ptycho tests to not share devices

Pull Request - State: closed - Opened by carterbox over 2 years ago

#223 - NEW: Monitor cost function for convergence

Pull Request - State: closed - Opened by carterbox over 2 years ago - 2 comments

#222 - NEW: Orthogonal probe tools using hermite basis

Pull Request - State: closed - Opened by carterbox over 2 years ago

#221 - NEW: Functions for complex valued wavefield plotting

Pull Request - State: closed - Opened by a4894z over 2 years ago - 2 comments

#220 - NEW: Implement Difference Map algorithm

Pull Request - State: closed - Opened by carterbox over 2 years ago

#219 - DOC: Add user warning for invalid diffraction pattern values

Pull Request - State: closed - Opened by carterbox over 2 years ago

#218 - NEW: Make mpi an optional feature

Pull Request - State: closed - Opened by carterbox over 2 years ago

#217 - DOC: Make the probe/data shape message more helpful

Pull Request - State: closed - Opened by carterbox over 2 years ago

#216 - num_batch default cannot be None

Issue - State: open - Opened by carterbox over 2 years ago
Labels: bug

#215 - BUG: constrain variable probes orthogonal

Pull Request - State: closed - Opened by carterbox over 2 years ago - 1 comment

#214 - API: Store diffraction data as uint16 instead of float32

Pull Request - State: closed - Opened by carterbox over 2 years ago

#213 - NEW: Smooth preconditioner and compact set updates

Pull Request - State: closed - Opened by carterbox over 2 years ago - 2 comments

#212 - NEW: Add utility function to estimate absorption image

Pull Request - State: closed - Opened by carterbox over 2 years ago

#211 - NEW: Add a function to plot probe power

Pull Request - State: closed - Opened by carterbox over 2 years ago - 1 comment

#210 - Utility Function to convert ptycho data to low rez scanning transmission tomography

Issue - State: closed - Opened by carterbox over 2 years ago
Labels: enhancement, ptycho

#209 - Probe power utility function

Issue - State: closed - Opened by carterbox over 2 years ago
Labels: enhancement, ptycho

#208 - NEW: Hard theshold ptycho object magnitude to <= 1.0

Pull Request - State: closed - Opened by carterbox over 2 years ago

#207 - Tests for bad initial probe guess

Issue - State: open - Opened by carterbox over 2 years ago

#206 - API: Enable online reconstruction

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 5 comments

#205 - REF: Update rPIE/lstsq_grad position correction

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#204 - NEW: Add momentum acceleration to object only for lstsq method

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 1 comment

#203 - NEW: Allow switching batch selection methods

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#202 - NEW: Implement finite probe support constraint

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 2 comments

#201 - NEW: Add data loading checks for nonfinite and negative values

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#200 - REF: Update lstsq variable probe updates

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#199 - CI: Avoid bug in CuPy version 10.3.0

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#198 - Fix some implementation differences in lstsq_grad method

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#197 - Check input diffraction patterns invalid values

Issue - State: closed - Opened by carterbox almost 3 years ago
Labels: good first issue

#196 - API: Make psi parameter of tike.ptycho.reconstruct positional

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 1 comment

#195 - DOC: Add context to first likely out of memory error

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#194 - API: Raise ValueError when ptycho input shapes are wrong

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 1 comment

#193 - NEW: Add tests and enable variable probe args for rPIE

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#192 - Fix memory leak due to CuPy automatic FFT Cache

Pull Request - State: closed - Opened by carterbox almost 3 years ago - 2 comments
Labels: bug

#191 - Lstsq updates

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#190 - API: Adjust rescaling scheme

Pull Request - State: closed - Opened by carterbox almost 3 years ago

#189 - Port position correction to RPIE

Pull Request - State: closed - Opened by carterbox about 3 years ago

#188 - DEV: Prototype some zernike polynomials

Pull Request - State: open - Opened by carterbox about 3 years ago - 3 comments

#187 - Memory leak when restarting reconstruction?

Issue - State: closed - Opened by carterbox about 3 years ago

#186 - DOC: Update docs after some RPie API changes

Pull Request - State: closed - Opened by carterbox about 3 years ago

#185 - API: Convert EPIE to RPIE

Pull Request - State: closed - Opened by carterbox about 3 years ago - 1 comment

#184 - BUG: Hide costs/times from IterativeOptions constructor

Pull Request - State: closed - Opened by carterbox about 3 years ago

#182 - API: Packing hyper-parameters into dataclasses

Pull Request - State: closed - Opened by carterbox about 3 years ago - 11 comments

#170 - BLD: Transition to setup.cfg pyproject.toml build process

Pull Request - State: closed - Opened by carterbox over 3 years ago

#166 - NEW: Wrap lamino operator in Pytorch module

Pull Request - State: open - Opened by carterbox over 3 years ago
Labels: enhancement

#164 - REF: Normalize lstsq_grad updates using total illumination

Pull Request - State: closed - Opened by carterbox over 3 years ago - 1 comment

#161 - NEW: Additional ptychography gradient-based approach using ADAM

Pull Request - State: closed - Opened by carterbox over 3 years ago - 1 comment

#158 - API: Add new grouped thread-pool operations and update Bucket

Pull Request - State: closed - Opened by carterbox over 3 years ago

#157 - API: Remove leading dimensions from arrays in ptycho.reconstruct

Pull Request - State: closed - Opened by carterbox over 3 years ago - 1 comment

#155 - CI: Try to save reconstruction results as artifacts

Pull Request - State: closed - Opened by carterbox over 3 years ago - 4 comments

#149 - multislice ptychography

Issue - State: open - Opened by yijiang1 over 3 years ago
Labels: ptycho

#148 - momentum acceleration for object and probe updates in the LSQ-ML reconstruction

Issue - State: closed - Opened by yijiang1 over 3 years ago
Labels: ptycho

#145 - sparse vs. compact group in LSQ-ML reconstruction

Issue - State: closed - Opened by yijiang1 over 3 years ago - 12 comments
Labels: good first issue, ptycho

#142 - Clean all references to num_batch from code

Issue - State: closed - Opened by carterbox over 3 years ago
Labels: good first issue

#135 - New ePIE, DM, MLs, API based on the new needed signature in ptychopy.

Issue - State: closed - Opened by kyuepublic almost 4 years ago - 2 comments
Labels: ptycho

#124 - NEW: Add multi-device to lstsq_grad method

Pull Request - State: closed - Opened by carterbox about 4 years ago - 9 comments

#103 - REF: Skip repeated line searches for mini-batches

Pull Request - State: closed - Opened by carterbox over 4 years ago - 1 comment

#101 - NEW: Implement a orthogonal probe relaxation function

Pull Request - State: open - Opened by carterbox over 4 years ago - 1 comment

#98 - NEW: Implement least-squares + gradient method

Pull Request - State: closed - Opened by carterbox over 4 years ago - 3 comments

#96 - NEW: Implement Alignment operator as composition with correct adjoints

Pull Request - State: closed - Opened by carterbox over 4 years ago - 1 comment

#94 - NEW: Solve the lamino-alignment problem

Pull Request - State: open - Opened by carterbox over 4 years ago - 1 comment

#82 - Add forward and adjoint gradient operators for regularization, and 2d USFFT functions

Pull Request - State: open - Opened by nikitinvv over 4 years ago - 4 comments

#81 - Cuda kernels are written inefficiently

Issue - State: closed - Opened by nikitinvv over 4 years ago - 3 comments

#74 - Add multi-energy feature to tike

Pull Request - State: open - Opened by YudongYao over 4 years ago - 4 comments

GitHub / AdvancedPhotonSource/tike issues and pull requests