Ecosyste.ms: Issues

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GitHub / AdvancedPhotonSource/tike issues and pull requests

#334 - Bug in Least Square Gradient.

Issue - State: open - Opened by taylorbuckway 5 months ago

#330 - BUG: Fix errors from deprecated API use with NumPy 2.0 API

Pull Request - State: closed - Opened by carterbox 7 months ago - 1 comment

#329 - Get updates from backport branch 0.25.x

Pull Request - State: closed - Opened by carterbox 7 months ago - 1 comment

#328 - REF: Merge functions that are no longer separated by reduction

Pull Request - State: closed - Opened by carterbox 7 months ago

#327 - REF: Change how costs are reduced

Pull Request - State: closed - Opened by carterbox 7 months ago - 1 comment

#326 - API: Move finite support probe constraints to probe constraints section

Pull Request - State: closed - Opened by carterbox 7 months ago - 1 comment

#325 - API: Purge difference map from tike.ptycho

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#324 - REL: Backport affine transform logging

Pull Request - State: closed - Opened by carterbox 8 months ago

#322 - REF: Reorganize how multi-device parallelism is implemented

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#321 - REF: Get number of slices dynamically at runtime

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#320 - DOC: Add full affine transform to output logs

Pull Request - State: closed - Opened by carterbox 8 months ago

#319 - REF: Reeenable probe support for lstsq_grad method

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#318 - REF: Get multi-slice number of slices dynamically and add simulated data

Pull Request - State: closed - Opened by carterbox 8 months ago - 2 comments

#317 - NEW: Add affine transformation to INFO logging output

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#316 - NEW: Implement multislice propagation operator with correct adjoint

Pull Request - State: closed - Opened by carterbox 9 months ago - 3 comments

#315 - NEW: Add Fresnel propagator for multi-slice

Pull Request - State: closed - Opened by carterbox 9 months ago - 1 comment

#314 - API: Add leading dimension to object for multi-slice

Pull Request - State: closed - Opened by carterbox 9 months ago - 1 comment

#313 - NEW: Mutlislice fwd infrastructure

Pull Request - State: closed - Opened by carterbox 9 months ago - 1 comment

#312 - NEW: inject extra dependencies into the container release

Pull Request - State: closed - Opened by carterbox 9 months ago

#311 - NEW: Use fixed confidence for position regularization

Pull Request - State: closed - Opened by carterbox 9 months ago - 1 comment

#310 - CI: BUG: Remove quotes from around arguments

Pull Request - State: closed - Opened by carterbox 9 months ago

#309 - CI: Revert back to release trigger by changing download URL

Pull Request - State: closed - Opened by carterbox 9 months ago

#308 - CI: Build containers from source instead of from conda

Pull Request - State: closed - Opened by carterbox 9 months ago

#307 - DOC: Update docs instructions for installation

Pull Request - State: closed - Opened by carterbox 9 months ago

#306 - CI: Update container publish script with some bug fixes

Pull Request - State: closed - Opened by carterbox 9 months ago

#305 - CI: Setup workflow to publish apptainers

Pull Request - State: closed - Opened by carterbox 9 months ago

#304 - NEW: Mitigate scan position global drift

Pull Request - State: closed - Opened by carterbox 10 months ago - 1 comment

#303 - added a test for studying the numerical stability of multislice propa…

Pull Request - State: closed - Opened by a4894z 10 months ago - 1 comment

#302 - BLD: Skip cupy 13.0 due to broken ReductionKernel for sm<7

Pull Request - State: closed - Opened by carterbox 12 months ago

#301 - BUG: Use syntax compatible with python 3.9/3.8

Pull Request - State: closed - Opened by carterbox about 1 year ago - 1 comment

#300 - NEW: Optional median filtering of probe "hot spots"

Pull Request - State: closed - Opened by a4894z about 1 year ago - 2 comments

#299 - NEW/BUG: Function to visualize AffineTransform

Pull Request - State: closed - Opened by carterbox about 1 year ago - 1 comment

#298 - NEW: Expose FFT Scaling option

Pull Request - State: closed - Opened by carterbox about 1 year ago - 6 comments

#297 - BUG: Remove unneeded device to host transfer

Pull Request - State: closed - Opened by carterbox about 1 year ago

#296 - NEW: Start migration to new CUDA stream API

Pull Request - State: closed - Opened by carterbox about 1 year ago - 1 comment

#294 - NEW: Stop reconstruction based on wall-time

Pull Request - State: closed - Opened by carterbox about 1 year ago

#293 - NEW: Allow enabling limits for probe position update magnitude

Pull Request - State: closed - Opened by mdw771 about 1 year ago - 2 comments

#292 - BUG: Don't initialize CUDA Streams at import time

Pull Request - State: closed - Opened by carterbox about 1 year ago

#290 - NEW: Use CuPy fuse to merge some reduction kernels

Pull Request - State: closed - Opened by carterbox over 1 year ago

#289 - DOC: Update example notebooks for latest version

Pull Request - State: closed - Opened by carterbox over 1 year ago

#288 - CI: Fix broken mpi4py removal step on CI

Pull Request - State: closed - Opened by carterbox over 1 year ago - 2 comments

#287 - REF: Load batches into contiguous memory blocks

Pull Request - State: closed - Opened by carterbox over 1 year ago

#286 - REF: Add NoPoolExecutor to avoid spawning threads for single GPU

Pull Request - State: closed - Opened by carterbox over 1 year ago

#285 - REF: Migrate RPIE and LSTSQ methods to new Stream manager

Pull Request - State: closed - Opened by carterbox over 1 year ago - 1 comment

#283 - DOC: Fixup example jupyter notebook with latest version

Issue - State: open - Opened by carterbox over 1 year ago

#282 - NEW: Enable pixel binning at load time for ptycho data

Pull Request - State: closed - Opened by carterbox over 1 year ago

#281 - BUG: Fix errors when probe updates disabled in lstsq method

Pull Request - State: closed - Opened by carterbox over 1 year ago

#280 - Test reconstructions with probe updates disabled.

Issue - State: closed - Opened by carterbox over 1 year ago

#279 - DOC: Make logging less verbose

Pull Request - State: closed - Opened by carterbox over 1 year ago - 1 comment

#278 - BUG: Duplicate arguments

Pull Request - State: closed - Opened by carterbox over 1 year ago

#277 - API: Remove redundant `model` parameter

Pull Request - State: closed - Opened by carterbox over 1 year ago

#276 - BUG: Fix wrong parameter name used to call smoothness_constraint

Pull Request - State: closed - Opened by carterbox over 1 year ago

#275 - REF: Actually copy parameters / Update convergence metric

Pull Request - State: closed - Opened by carterbox over 1 year ago

#274 - NEW: Hybrid Wobbly Center Random Clustering method

Pull Request - State: closed - Opened by carterbox over 1 year ago

#271 - REF: Move constraints into general iteration loop

Pull Request - State: closed - Opened by carterbox over 1 year ago

#270 - REF: Shared preconditioner computation between algorithms

Pull Request - State: closed - Opened by carterbox over 1 year ago

#269 - NEW: Trim memory pool at the end of reconstruction

Pull Request - State: closed - Opened by carterbox over 1 year ago

#268 - CI: Pin the CUDA version because of driver on workers

Pull Request - State: closed - Opened by carterbox over 1 year ago

#267 - BUG: Disable log scale on plot_cost_convergence when negative

Pull Request - State: closed - Opened by carterbox over 1 year ago

#266 - API: Use CUDA Streams

Pull Request - State: closed - Opened by carterbox over 1 year ago - 1 comment

#265 - DOC: Remove unused files from docs folder

Pull Request - State: closed - Opened by carterbox over 1 year ago

#264 - BUG: Allow for singleton clusters in compact cluster

Pull Request - State: closed - Opened by carterbox over 1 year ago

#263 - Assertion in compact cluster method is tripped when running on 8 GPUs

Issue - State: open - Opened by carterbox over 1 year ago
Labels: bug

#262 - Multi grid

Pull Request - State: open - Opened by carterbox almost 2 years ago

#261 - API: Disable constraints by default

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#260 - NEW: Track evolving probe power

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#259 - DOC: Add texplanation for the tike.ptycho coordinate system

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#258 - NEW: Allow mixed precision operators

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#257 - NEW: Assorted upgrades

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#256 - BUG: Some bug fixes and test changes

Pull Request - State: closed - Opened by carterbox almost 2 years ago

#255 - REF: Add type hints to some modules

Pull Request - State: closed - Opened by carterbox about 2 years ago

#254 - REF: Cluster compact

Pull Request - State: closed - Opened by carterbox about 2 years ago

#253 - Expose the randomness API

Issue - State: open - Opened by carterbox about 2 years ago

#252 - BUG: Fix disabled threadpool

Pull Request - State: closed - Opened by carterbox about 2 years ago

#251 - CI: Migrate unit tests to actions from azure

Pull Request - State: closed - Opened by carterbox about 2 years ago

#250 - TST: Refactor reconstruction tests into smaller modules

Pull Request - State: closed - Opened by carterbox about 2 years ago

#249 - REF: Move clustering methods to a single module

Pull Request - State: closed - Opened by carterbox about 2 years ago - 1 comment

#248 - API: Refactor Comm, MPIComm, ThreadPool

Pull Request - State: closed - Opened by carterbox about 2 years ago

#247 - REF: Optimize patch adjoint operation

Pull Request - State: closed - Opened by carterbox about 2 years ago - 1 comment

#246 - NEW: Scale down probe updates for compact clustering

Pull Request - State: closed - Opened by carterbox about 2 years ago

#245 - NEW: Synchronize global position transform across devices

Pull Request - State: closed - Opened by carterbox about 2 years ago

#244 - API: Use Guassian derivative image gradients

Pull Request - State: closed - Opened by carterbox about 2 years ago

#243 - API: Separate cost function implementations from operator classes

Pull Request - State: closed - Opened by carterbox about 2 years ago

#242 - NEW: Use better image gradient for position updates

Pull Request - State: closed - Opened by carterbox about 2 years ago

#241 - NEW: Estimate global position transformation

Pull Request - State: closed - Opened by carterbox about 2 years ago

#240 - Use decorators to indicate which parts of API are experimental

Issue - State: open - Opened by carterbox about 2 years ago
Labels: enhancement

#239 - BUG: Remove copypasta setting of wrong momentum for position updates

Pull Request - State: closed - Opened by carterbox over 2 years ago

#238 - Use statistical model selection methods to determine the best number of probes

Issue - State: open - Opened by carterbox over 2 years ago
Labels: enhancement

#237 - STUB: Prototype regularize object scaling

Pull Request - State: open - Opened by carterbox over 2 years ago

#236 - API: Disable probe support by default

Pull Request - State: closed - Opened by carterbox over 2 years ago - 1 comment

#235 - BLD: Move package metadata into pyproject.toml

Pull Request - State: closed - Opened by carterbox over 2 years ago