AdvancedPhotonSource/tike issues and pull requests

#333 - rPIE tweaks, comment out rPIE scan position correction as it's not doing things correctly (I'll fix later).

Pull Request - State: closed - Opened by a4894z about 1 month ago - 1 comment

#332 - multislice rPIE ready for main branch after testing Daniel's reworkng of multiGPU workflow

Pull Request - State: closed - Opened by a4894z about 1 month ago - 1 comment

#331 - probe options and object options now include relevant Fresnel spectrum propagation multislice parameters and are used in the fwd and adj operators

Pull Request - State: closed - Opened by a4894z 2 months ago - 1 comment

#330 - BUG: Fix errors from deprecated API use with NumPy 2.0 API

Pull Request - State: closed - Opened by carterbox 2 months ago - 1 comment

#329 - Get updates from backport branch 0.25.x

Pull Request - State: closed - Opened by carterbox 2 months ago - 1 comment

#328 - REF: Merge functions that are no longer separated by reduction

Pull Request - State: closed - Opened by carterbox 2 months ago

#327 - REF: Change how costs are reduced

Pull Request - State: closed - Opened by carterbox 2 months ago - 1 comment

#326 - API: Move finite support probe constraints to probe constraints section

Pull Request - State: closed - Opened by carterbox 2 months ago - 1 comment

#325 - API: Purge difference map from tike.ptycho

Pull Request - State: closed - Opened by carterbox 3 months ago - 1 comment

#324 - REL: Backport affine transform logging

Pull Request - State: closed - Opened by carterbox 3 months ago

#323 - Weight cost functions to avoid overfitting to noise at edges

Issue - State: open - Opened by carterbox 3 months ago

#322 - REF: Reorganize how multi-device parallelism is implemented

Pull Request - State: closed - Opened by carterbox 3 months ago - 1 comment

#321 - REF: Get number of slices dynamically at runtime

Pull Request - State: closed - Opened by carterbox 3 months ago - 1 comment

#320 - DOC: Add full affine transform to output logs

Pull Request - State: closed - Opened by carterbox 3 months ago

#319 - REF: Reeenable probe support for lstsq_grad method

Pull Request - State: closed - Opened by carterbox 3 months ago - 1 comment

#318 - REF: Get multi-slice number of slices dynamically and add simulated data

Pull Request - State: closed - Opened by carterbox 4 months ago - 2 comments

#317 - NEW: Add affine transformation to INFO logging output

Pull Request - State: closed - Opened by carterbox 4 months ago - 1 comment

#316 - NEW: Implement multislice propagation operator with correct adjoint

Pull Request - State: closed - Opened by carterbox 4 months ago - 3 comments

#315 - NEW: Add Fresnel propagator for multi-slice

Pull Request - State: closed - Opened by carterbox 4 months ago - 1 comment

#314 - API: Add leading dimension to object for multi-slice

Pull Request - State: closed - Opened by carterbox 4 months ago - 1 comment

#313 - NEW: Mutlislice fwd infrastructure

Pull Request - State: closed - Opened by carterbox 4 months ago - 1 comment

#312 - NEW: inject extra dependencies into the container release

Pull Request - State: closed - Opened by carterbox 4 months ago

#311 - NEW: Use fixed confidence for position regularization

Pull Request - State: closed - Opened by carterbox 4 months ago - 1 comment

#310 - CI: BUG: Remove quotes from around arguments

Pull Request - State: closed - Opened by carterbox 4 months ago

#309 - CI: Revert back to release trigger by changing download URL

Pull Request - State: closed - Opened by carterbox 5 months ago

#308 - CI: Build containers from source instead of from conda

Pull Request - State: closed - Opened by carterbox 5 months ago

#307 - DOC: Update docs instructions for installation

Pull Request - State: closed - Opened by carterbox 5 months ago

#306 - CI: Update container publish script with some bug fixes

Pull Request - State: closed - Opened by carterbox 5 months ago

#305 - CI: Setup workflow to publish apptainers

Pull Request - State: closed - Opened by carterbox 5 months ago

#304 - NEW: Mitigate scan position global drift

Pull Request - State: closed - Opened by carterbox 5 months ago - 1 comment

#303 - added a test for studying the numerical stability of multislice propa…

Pull Request - State: closed - Opened by a4894z 6 months ago - 1 comment

#302 - BLD: Skip cupy 13.0 due to broken ReductionKernel for sm<7

Pull Request - State: closed - Opened by carterbox 7 months ago

#301 - BUG: Use syntax compatible with python 3.9/3.8

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#300 - NEW: Optional median filtering of probe "hot spots"

Pull Request - State: closed - Opened by a4894z 8 months ago - 2 comments

#299 - NEW/BUG: Function to visualize AffineTransform

Pull Request - State: closed - Opened by carterbox 8 months ago - 1 comment

#298 - NEW: Expose FFT Scaling option

Pull Request - State: closed - Opened by carterbox 9 months ago - 6 comments

#297 - BUG: Remove unneeded device to host transfer

Pull Request - State: closed - Opened by carterbox 10 months ago

#296 - NEW: Start migration to new CUDA stream API

Pull Request - State: closed - Opened by carterbox 10 months ago - 1 comment

#295 - API: Remove tike.random.randomizer_cp to prevent context on unused devices

Pull Request - State: closed - Opened by carterbox 10 months ago

#294 - NEW: Stop reconstruction based on wall-time

Pull Request - State: closed - Opened by carterbox 10 months ago

#293 - NEW: Allow enabling limits for probe position update magnitude

Pull Request - State: closed - Opened by mdw771 10 months ago - 2 comments

#292 - BUG: Don't initialize CUDA Streams at import time

Pull Request - State: closed - Opened by carterbox 10 months ago

#291 - 1) Control frequency and starting epoch when we update the probe, 2) control frequency and whether we update sample/probe scaling using mean of abs of object

Pull Request - State: closed - Opened by a4894z 10 months ago - 10 comments

#290 - NEW: Use CuPy fuse to merge some reduction kernels

Pull Request - State: closed - Opened by carterbox 11 months ago

#289 - DOC: Update example notebooks for latest version

Pull Request - State: closed - Opened by carterbox 11 months ago

#288 - CI: Fix broken mpi4py removal step on CI

Pull Request - State: closed - Opened by carterbox 12 months ago - 2 comments

#287 - REF: Load batches into contiguous memory blocks

Pull Request - State: closed - Opened by carterbox 12 months ago

#286 - REF: Add NoPoolExecutor to avoid spawning threads for single GPU

Pull Request - State: closed - Opened by carterbox 12 months ago

#285 - REF: Migrate RPIE and LSTSQ methods to new Stream manager

Pull Request - State: closed - Opened by carterbox 12 months ago - 1 comment

#284 - Only return / plot the cost function intermittently or when requested

Issue - State: open - Opened by carterbox 12 months ago

#283 - DOC: Fixup example jupyter notebook with latest version

Issue - State: open - Opened by carterbox 12 months ago

#282 - NEW: Enable pixel binning at load time for ptycho data

Pull Request - State: closed - Opened by carterbox 12 months ago

#281 - BUG: Fix errors when probe updates disabled in lstsq method

Pull Request - State: closed - Opened by carterbox 12 months ago

#280 - Test reconstructions with probe updates disabled.

Issue - State: closed - Opened by carterbox about 1 year ago

#279 - DOC: Make logging less verbose

Pull Request - State: closed - Opened by carterbox about 1 year ago - 1 comment

#278 - BUG: Duplicate arguments

Pull Request - State: closed - Opened by carterbox about 1 year ago

#277 - API: Remove redundant `model` parameter

Pull Request - State: closed - Opened by carterbox about 1 year ago

#276 - BUG: Fix wrong parameter name used to call smoothness_constraint

Pull Request - State: closed - Opened by carterbox about 1 year ago

#275 - REF: Actually copy parameters / Update convergence metric

Pull Request - State: closed - Opened by carterbox about 1 year ago

#274 - NEW: Hybrid Wobbly Center Random Clustering method

Pull Request - State: closed - Opened by carterbox about 1 year ago

#273 - New TIKE functionality for missing measurement regions on detector and Poisson noise model for exitwave update

Pull Request - State: closed - Opened by a4894z over 1 year ago