Ecosyste.ms: Issues

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GitHub / Adamtaranto/teloclip issues and pull requests

#26 - Execution of Teloclip and input output streams

Issue - State: open - Opened by ufaroooq about 2 months ago - 2 comments

#25 - Could you explain in detail how to extend reads?

Issue - State: open - Opened by zhangwenda0518 7 months ago - 3 comments

#24 - Add fuzzy search + code cleanup

Pull Request - State: open - Opened by Adamtaranto 8 months ago

#23 - Missing isMotifInClip()

Issue - State: closed - Opened by Adamtaranto 8 months ago

#22 - Add metadata to extracted overhang reads

Issue - State: open - Opened by Adamtaranto 11 months ago - 1 comment
Labels: enhancement

#21 - Feature: Fuzzy motif search

Issue - State: open - Opened by Adamtaranto 11 months ago
Labels: enhancement

#20 - Confusing about input and output file

Issue - State: open - Opened by cyycyj 11 months ago - 17 comments
Labels: question

#19 - Improve readability

Issue - State: open - Opened by Adamtaranto 11 months ago
Labels: enhancement

#18 - 13 refresh codebase

Pull Request - State: closed - Opened by Adamtaranto 11 months ago

#17 - No 'rU' option in Python 3.12

Issue - State: closed - Opened by PengfeiInTuebingen 11 months ago - 4 comments

#16 - Feature: Align and Extend

Issue - State: open - Opened by Adamtaranto 11 months ago - 5 comments
Labels: enhancement

#15 - Package Distribution

Issue - State: open - Opened by Adamtaranto 11 months ago - 1 comment
Labels: enhancement

#14 - Automate testing

Issue - State: open - Opened by Adamtaranto 11 months ago - 1 comment
Labels: enhancement

#13 - Refresh codebase

Issue - State: closed - Opened by Adamtaranto 11 months ago
Labels: enhancement

#12 - Convert rU to r

Pull Request - State: closed - Opened by Adamtaranto 11 months ago - 1 comment

#11 - error "invalid mode: 'rU' " in teloclip (v. bioconda)

Issue - State: closed - Opened by stefankusch 11 months ago

#10 - Automatically extend contigs

Issue - State: open - Opened by ihbxiongjie over 2 years ago - 1 comment
Labels: question

#9 - Find existing telo repeats in contigs

Issue - State: closed - Opened by Adamtaranto over 3 years ago - 1 comment
Labels: enhancement

#8 - NNNNN reads

Issue - State: closed - Opened by JWDebler over 3 years ago - 8 comments

#7 - functionality to extract reads at NNN gaps in scaffolds?

Issue - State: closed - Opened by juntkym almost 5 years ago - 2 comments

#6 - Interactive Contig extension

Issue - State: closed - Opened by Adamtaranto about 6 years ago - 1 comment
Labels: enhancement, wontfix

#5 - Summary report option

Issue - State: open - Opened by Adamtaranto about 6 years ago
Labels: enhancement

#4 - Verify: Correct read slice coords for negative strand alignments

Issue - State: closed - Opened by Adamtaranto about 6 years ago - 2 comments
Labels: bug

#3 - Calculate alignment end position from CIGAR

Issue - State: closed - Opened by Adamtaranto about 6 years ago - 1 comment
Labels: bug

#2 - Add rev complement motif search

Issue - State: closed - Opened by Adamtaranto about 6 years ago - 1 comment
Labels: enhancement

#1 - Restrict motif search to clipped region

Issue - State: closed - Opened by Adamtaranto about 6 years ago - 1 comment
Labels: enhancement