Abe404/root_painter issues and pull requests

#146 - Open existing project | Cannot find file error

Issue - State: closed - Opened by jeremysadkins about 1 month ago - 5 comments

#145 - Feature Request: Support for custom backend models (or documentation)

Issue - State: open - Opened by FletcherFT about 1 month ago - 1 comment

#144 - Bump torch from 1.13.1 to 2.2.0

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#143 - fix pip install for python3.12

Issue - State: open - Opened by Abe404 3 months ago

#142 - Bump setuptools from 65.5.1 to 70.0.0 in /painter

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#141 - Fail to install Rootpainter on my local pc.

Issue - State: closed - Opened by ExtroT 4 months ago - 2 comments

#140 - add transparency slider for human annotation & english/spanish support for controls window

Pull Request - State: open - Opened by Felipegalind0 4 months ago - 11 comments

#139 - added controls dialog that can be opened with a tickbox or by pressing C

Pull Request - State: closed - Opened by Felipegalind0 4 months ago - 5 comments

#137 - Bump pillow from 9.3.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#136 - users should be warned when they try to start training when a model is already training

Issue - State: open - Opened by Abe404 6 months ago - 4 comments

#134 - Increase maximum image size (PIL)

Issue - State: open - Opened by Abe404 7 months ago
Labels: ready for release

#133 - np.int

Issue - State: open - Opened by Abe404 8 months ago
Labels: ready for release

#130 - First Time Use, permission errors during initializing a new project.

Issue - State: closed - Opened by jeremysadkins 8 months ago - 2 comments

#128 - Update README.md

Pull Request - State: closed - Opened by Abe404 10 months ago

#126 - Bump imagecodecs from 2021.8.26 to 2023.9.18

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#125 - Bump imagecodecs from 2021.8.26 to 2023.9.18 in /trainer

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#124 - Bump imagecodecs from 2021.11.20 to 2023.9.18 in /painter

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#123 - Bump pillow from 9.3.0 to 10.0.1 in /painter

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#122 - Bump pillow from 9.3.0 to 10.0.1 in /trainer

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#121 - Bump pillow from 9.3.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#120 - Create training dataset functionality is too confusing. Hide it.

Issue - State: open - Opened by Abe404 about 1 year ago - 1 comment

#119 - segmentation output folder should be automatically suggested/created

Issue - State: open - Opened by Abe404 about 1 year ago - 2 comments

#118 - cpu inference

Issue - State: open - Opened by Abe404 about 1 year ago
Labels: ready for release

#114 - UI improvement for segment folder menu?

Issue - State: open - Opened by ethanbass about 1 year ago - 3 comments

#112 - Bump scipy from 1.9.3 to 1.10.0 in /painter

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#111 - Update FAQ.md

Pull Request - State: closed - Opened by Abe404 over 1 year ago

#110 - Readme suggestions

Issue - State: open - Opened by nmodinMerkle over 1 year ago

#109 - show recent projects

Issue - State: open - Opened by Abe404 over 1 year ago

#107 - fix layout of axis options on the metrics plot on windws

Issue - State: open - Opened by Abe404 over 1 year ago

#106 - Provide error information to user for segment folder

Issue - State: open - Opened by Abe404 over 1 year ago
Labels: important

#105 - Provide feedback to user (and block segmentation) when there is a mismatch between the number of files in a directory

Issue - State: open - Opened by Abe404 over 1 year ago
Labels: important

#104 - corrective metrics plot 'show selected' option does not show when first opening the plot

Issue - State: open - Opened by Abe404 over 1 year ago

#103 - allow masks to work for larger images

Issue - State: closed - Opened by Abe404 over 1 year ago - 3 comments
Labels: ready for release

#102 - add option to auto-enhance image contrast

Issue - State: closed - Opened by Abe404 over 1 year ago - 3 comments
Labels: ready for release

#101 - have option to show metrics plot with time as x-axis

Issue - State: closed - Opened by Abe404 over 1 year ago - 6 comments
Labels: ready for release, important

#100 - Show brush size in the interface

Issue - State: closed - Opened by Abe404 over 1 year ago - 2 comments
Labels: ready for release

#99 - image resize

Issue - State: closed - Opened by Abe404 over 1 year ago - 2 comments

#98 - Output model name in corrective-metrics

Issue - State: closed - Opened by Abe404 over 1 year ago - 3 comments
Labels: ready for release

#97 - Feature Request: Show location and image pixel value

Issue - State: open - Opened by Abe404 over 1 year ago

#96 - Versioning Projects

Issue - State: open - Opened by Abe404 over 1 year ago

#95 - Evaluate 8 bit optimisers

Issue - State: open - Opened by Abe404 over 1 year ago

#94 - Create Training Dataset inverts some images.

Issue - State: closed - Opened by Abe404 over 1 year ago - 4 comments
Labels: bug, good first issue, ready for release

#93 - show image in context sometimes inaccurate

Issue - State: closed - Opened by Abe404 over 1 year ago - 2 comments
Labels: bug, good first issue, ready for release

#92 - show image in context should update when going to the next image

Issue - State: closed - Opened by Abe404 over 1 year ago - 3 comments
Labels: good first issue, ready for release

#91 - make it easier to see the current sync directory

Issue - State: closed - Opened by Abe404 over 1 year ago - 3 comments
Labels: ready for release

#90 - wrong dataset message should mention option to respecify the sync directory

Issue - State: closed - Opened by Abe404 over 1 year ago - 5 comments
Labels: ready for release

#89 - Minor issue with input field of 'Create training dataset' dialog

Issue - State: closed - Opened by thiagomaf over 1 year ago

#88 - colab training progress output

Issue - State: open - Opened by Abe404 over 1 year ago

#87 - Complex input image filenames will crash the server when training

Issue - State: closed - Opened by thiagomaf over 1 year ago - 1 comment

#86 - Installing Root_trainer on an M1 Max Apple Silicon

Issue - State: open - Opened by sck-at-ucy over 1 year ago - 17 comments

#83 - Add functionality to assign corrections to segmentations

Pull Request - State: closed - Opened by rohanorton over 1 year ago

#82 - pre-segment should be more obvious

Issue - State: open - Opened by Abe404 over 1 year ago

#81 - keyboard shortcuts should be more discoverable

Issue - State: open - Opened by Abe404 over 1 year ago - 1 comment
Labels: ready for release

#80 - "0 out of 40 of max 60 epochs without progress" is confusing.

Issue - State: open - Opened by Abe404 over 1 year ago

#79 - Initial interactive training with clear examples is too difficult

Issue - State: open - Opened by Abe404 over 1 year ago

#78 - pay apple so i can have a simpler install process for the mac client

Issue - State: open - Opened by Abe404 over 1 year ago

#77 - painter readme is out of date

Issue - State: open - Opened by Abe404 over 1 year ago - 2 comments

#76 - Bump torch from 1.12.1 to 1.13.1 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#75 - instructions folder empty

Issue - State: closed - Opened by jmicciulla over 1 year ago - 3 comments

#74 - Segment folder command line option for server/trainer

Issue - State: open - Opened by Abe404 almost 2 years ago

#73 - Bump setuptools from 60.5.0 to 65.5.1 in /painter

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#72 - images missing in metrics plot

Issue - State: closed - Opened by Abe404 almost 2 years ago - 1 comment

#71 - Bump pillow from 9.0.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#70 - Bump pillow from 9.0.1 to 9.3.0 in /painter

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#69 - Bump pillow from 9.0.1 to 9.3.0 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#68 - Show informative error message when dataset not found.

Issue - State: closed - Opened by Abe404 almost 2 years ago - 3 comments
Labels: bug, ready for release, important

#66 - mask images

Issue - State: closed - Opened by Abe404 almost 2 years ago - 2 comments
Labels: ready for release

#65 - Should be possible to specify nested project dataset

Issue - State: closed - Opened by Abe404 almost 2 years ago - 2 comments
Labels: ready for release

#64 - open project files with RootPainter

Issue - State: open - Opened by Abe404 almost 2 years ago

#63 - select source image directory for project should default to sync_dir

Issue - State: closed - Opened by Abe404 almost 2 years ago - 2 comments

#62 - Expand tutorial to include segmentation of original dataset and extraction of traits

Issue - State: open - Opened by Abe404 almost 2 years ago - 1 comment

#61 - Sync is too slow in the colab tutorial

Issue - State: open - Opened by Abe404 almost 2 years ago - 3 comments

#59 - Image skip to start/to end/to index function

Issue - State: closed - Opened by geezacoleman almost 2 years ago - 4 comments

#57 - Could not find a backend to open image

Issue - State: closed - Opened by big-charles almost 2 years ago - 1 comment

#56 - Width/Heigth mismatch

Issue - State: closed - Opened by big-charles almost 2 years ago - 2 comments

#54 - local server gui

Issue - State: open - Opened by Abe404 about 2 years ago

#53 - lung tutorial is too difficult

Issue - State: open - Opened by Abe404 about 2 years ago

#52 - minimum dataset image size warning

Issue - State: open - Opened by Abe404 about 2 years ago

#51 - Could not load plugin xcb

Issue - State: closed - Opened by Abe404 about 2 years ago

#50 - segmentation RVE option

Issue - State: closed - Opened by Abe404 about 2 years ago - 1 comment
Labels: ready for release

#49 - Output probabilities

Issue - State: closed - Opened by Abe404 about 2 years ago - 2 comments

#48 - Version number specified in multiple places

Issue - State: open - Opened by Abe404 about 2 years ago

#47 - 45 windows build failing actions

Pull Request - State: closed - Opened by Abe404 about 2 years ago

#46 - 45 windows build failing actions

Pull Request - State: closed - Opened by Abe404 about 2 years ago

#45 - windows build failing (on github CI/Actions)

Issue - State: closed - Opened by Abe404 about 2 years ago

#44 - time remaining

Pull Request - State: closed - Opened by Abe404 about 2 years ago

#43 - export options not showing on metrics plot

Issue - State: open - Opened by Abe404 about 2 years ago - 1 comment
Labels: bug

#42 - Display time remaining for segmentation/extracting length

Issue - State: closed - Opened by nesod1 about 2 years ago - 4 comments
Labels: enhancement

#41 - ubuntu (20) Qt platform plugin could be initialized.

Issue - State: closed - Opened by Abe404 about 2 years ago - 3 comments

#40 - ubuntu installer

Issue - State: closed - Opened by Abe404 about 2 years ago - 2 comments

#39 - Bump numpy from 1.21 to 1.22.0 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#38 - Create dataset should try to complete even if it fails for some images

Issue - State: closed - Opened by Abe404 over 2 years ago - 1 comment
Labels: enhancement

#37 - Bump pillow from 8.2.0 to 9.0.1 in /painter

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#36 - Bump pillow from 8.2.0 to 9.0.1 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#35 - squares cut out of predicted region

Issue - State: closed - Opened by geezacoleman over 2 years ago - 6 comments

#34 - create dataset with small images can cause crash

Issue - State: closed - Opened by Abe404 over 2 years ago - 2 comments

#33 - extract count is broken in the latest release!

Issue - State: closed - Opened by Abe404 over 2 years ago - 2 comments
Labels: bug

#32 - Bump numpy from 1.18.4 to 1.21.0 in /painter

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#31 - Bump numpy from 1.18.0 to 1.21.0 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#30 - Bump pillow from 8.2.0 to 9.0.0 in /trainer

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

GitHub / Abe404/root_painter issues and pull requests