Ecosyste.ms: Issues

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GitHub / ANTsX/ANTsPyNet issues and pull requests

#138 - Tensorflow: unnecessary retracing

Issue - State: open - Opened by neverix 2 months ago - 2 comments

#136 - ENH: Forgot 2nd deprecated SR function.

Pull Request - State: closed - Opened by ntustison 2 months ago

#135 - ENH: Deprecate super resolution function.

Pull Request - State: closed - Opened by ntustison 2 months ago

#134 - Getting an error when trying the super resolution tutorial

Issue - State: closed - Opened by GuillaumeTh 2 months ago - 6 comments

#133 - "Nick" parcellation for mouse brains

Issue - State: open - Opened by araikes 3 months ago - 25 comments

#132 - DOC: Typo T2 -> T1

Pull Request - State: closed - Opened by cookpa 3 months ago

#131 - ENH: Add rotation as a possible transform option.

Pull Request - State: closed - Opened by ntustison 3 months ago

#130 - ENH: Set cache directory with get_antsxnet_cache_directory() function

Pull Request - State: closed - Opened by cookpa 3 months ago - 8 comments

#129 - BUG/DOC: Remove double smoothing.

Pull Request - State: closed - Opened by ntustison 3 months ago

#127 - ENH: Add explicit shiva u-net construction.

Pull Request - State: closed - Opened by ntustison 3 months ago

#125 - Convolutional autoencoder 3D model missing imports

Issue - State: closed - Opened by esphilli 3 months ago - 1 comment

#124 - PVS segmentation

Pull Request - State: closed - Opened by ntustison 4 months ago

#123 - Bump certifi from 2024.2.2 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#122 - Error: AttributeError: module 'ants' has no attribute 'image_read'

Issue - State: closed - Opened by GayanSamuditha 5 months ago - 1 comment

#120 - Bump urllib3 from 2.2.1 to 2.2.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#119 - Issue with initialization of DDSRCNN model

Issue - State: closed - Opened by xdavidg 5 months ago - 9 comments

#118 - ENH: Add Jay STPT parcellation.

Pull Request - State: closed - Opened by ntustison 6 months ago

#117 - tensor flow deprecates alpha in LeakyRelu in favor of negative_slope

Issue - State: open - Opened by stnava 6 months ago - 4 comments

#116 - DOC: license in pyproject.toml

Pull Request - State: closed - Opened by cookpa 6 months ago

#115 - Can't install today

Issue - State: closed - Opened by cookpa 6 months ago - 23 comments

#114 - error when using super_resolution

Issue - State: closed - Opened by wdddddd 6 months ago - 3 comments

#113 - ENH: Add MRA brain vessels segmetnation.

Pull Request - State: closed - Opened by ntustison 6 months ago

#112 - BUG: Indexing and array sizes.

Pull Request - State: closed - Opened by ntustison 7 months ago

#111 - COMP: Update tensorflow

Pull Request - State: closed - Opened by cookpa 7 months ago - 1 comment

#110 - Requirements for pypi releases

Issue - State: closed - Opened by cookpa 7 months ago - 5 comments

#109 - ENH: Remove 'sixTissueOctantBrainSegmentationWithPriors2' from list

Pull Request - State: closed - Opened by cookpa 7 months ago

#108 - Testing other models for brain age predicition

Issue - State: closed - Opened by abanic7 7 months ago - 7 comments

#107 - DTK labeling stops in the middle of processing.

Issue - State: closed - Opened by sj-choi 8 months ago - 11 comments

#106 - BUG: Inner and outer probabilities stored incorrectly.

Pull Request - State: closed - Opened by ntustison 8 months ago

#105 - Cortical gray matter appears to be too thin.

Issue - State: closed - Opened by sj-choi 8 months ago - 26 comments

#104 - Move to pyproject.toml

Pull Request - State: closed - Opened by cookpa 8 months ago - 2 comments

#103 - COMP: Versions in requirements.txt

Pull Request - State: closed - Opened by cookpa 8 months ago - 3 comments

#99 - fix typo and missing import in alexnet

Pull Request - State: closed - Opened by ncullen93 9 months ago - 1 comment

#98 - errors in some models

Issue - State: closed - Opened by znee 9 months ago - 11 comments

#97 - Python Version Info Missing

Issue - State: open - Opened by toomanycats 9 months ago - 8 comments

#96 - Seeking GPU Recommendations for Optimizing ANTsXNet Performance

Issue - State: closed - Opened by GayanSamuditha 9 months ago - 2 comments

#95 - Publication describing Brain Extraction Training

Issue - State: closed - Opened by gladomat 9 months ago - 10 comments

#94 - consider using pins to store pretrained networks

Issue - State: closed - Opened by ncullen93 9 months ago - 2 comments

#92 - add fetch_architecture and list_architectures

Pull Request - State: closed - Opened by ncullen93 9 months ago

#91 - Add tests and integrate with CI

Issue - State: closed - Opened by ncullen93 9 months ago

#90 - add pretrained submodule

Pull Request - State: closed - Opened by ncullen93 9 months ago

#89 - Complicated Dockerfile

Issue - State: closed - Opened by mateuszpawlik 10 months ago - 4 comments

#88 - ENH: Throw exception when getting data or networks without url

Pull Request - State: closed - Opened by cookpa about 1 year ago - 1 comment

#87 - Tensorflow warning (deep_flash utilities)

Issue - State: closed - Opened by aa2782 about 1 year ago - 9 comments

#86 - issue with deep_flash utility

Issue - State: closed - Opened by aa2782 over 1 year ago - 7 comments

#85 - cpu allocator exceeds 10% of free memory.

Issue - State: closed - Opened by dvictorious1 over 1 year ago - 5 comments

#84 - Hi，I encounter one problem about using antspynet.utilities.deep_atropos !

Issue - State: closed - Opened by FreshmanMa over 1 year ago - 10 comments

#83 - Warnings being treated as errors

Issue - State: closed - Opened by anant-dadu over 1 year ago - 3 comments

#82 - DKT label 14 missing in help

Issue - State: closed - Opened by samtorrisi over 1 year ago - 2 comments

#81 - Image orientation is changed.

Issue - State: closed - Opened by GYDDHPY over 1 year ago - 2 comments

#80 - DOC: Typo resused -> reused

Pull Request - State: closed - Opened by cookpa over 1 year ago

#79 - BUG: More cache logic fixes.

Pull Request - State: closed - Opened by ntustison over 1 year ago - 4 comments

#78 - ENH: Logic check.

Pull Request - State: closed - Opened by ntustison over 1 year ago - 1 comment

#77 - Incorrect sform/qform in `croppedMni152`

Issue - State: closed - Opened by dipterix over 1 year ago - 17 comments

#76 - Add `__version__` to package

Pull Request - State: closed - Opened by dipterix over 1 year ago - 1 comment

#75 - Minor suggestion

Issue - State: closed - Opened by dipterix over 1 year ago - 1 comment

#72 - Noisy slices after MRI super resolution

Issue - State: closed - Opened by Zzariry over 1 year ago - 7 comments

#71 - Using ANTsPyNet for brain age prediction

Issue - State: closed - Opened by abanic7 over 1 year ago - 23 comments

#70 - allen_brain_leftright_coronal_mask_weights

Issue - State: closed - Opened by cookpa over 1 year ago - 3 comments

#69 - inpainting

Issue - State: closed - Opened by ntustison almost 2 years ago - 1 comment

#68 - hypermapper registration assumptions

Issue - State: closed - Opened by stnava almost 2 years ago - 3 comments

#67 - U-net optimization for mouse MRI data

Issue - State: closed - Opened by tfrawleyNIA almost 2 years ago - 5 comments

#66 - Create LICENSE.md

Pull Request - State: closed - Opened by ntustison about 2 years ago

#65 - License for ANTsPyNet

Issue - State: closed - Opened by gladomat about 2 years ago - 1 comment

#64 - not an issue just sharing (claustrum)

Issue - State: closed - Opened by samtorrisi about 2 years ago - 1 comment

#63 - ANTsPyNet's super resolution models

Issue - State: closed - Opened by carlouic about 2 years ago - 5 comments

#62 - antspyx version

Issue - State: closed - Opened by scalphunters over 2 years ago - 2 comments

#61 - Pytorch version？

Issue - State: closed - Opened by ElegantLee over 2 years ago - 1 comment

#60 - again: "TypeError: Expected `trainable` argument to be a boolean, but got: None"

Issue - State: closed - Opened by storrisi42 over 2 years ago - 11 comments

#59 - BUG: Remove broken link

Pull Request - State: closed - Opened by cookpa over 2 years ago

#58 - Figshare download error on pretrained network

Issue - State: closed - Opened by cookpa over 2 years ago - 6 comments

#57 - Error on tf.keras.models.load_model, missing 'trainable' argument

Issue - State: closed - Opened by cookpa over 2 years ago - 11 comments

#56 - BUG: antsxnet_cache_directory not used in one line

Pull Request - State: closed - Opened by cookpa over 2 years ago

#55 - ENH: Check for data / networks in the cache before calling get_file

Pull Request - State: closed - Opened by cookpa over 2 years ago - 3 comments

#54 - Understanding the DKT Parcellation for skull stripped data

Issue - State: closed - Opened by Jeffotter over 2 years ago - 2 comments

#53 - Environment variable for antsxnet_cache_directory

Issue - State: closed - Opened by cookpa over 2 years ago - 4 comments

#52 - DeepFlash for Hippocampal Subfields Segmentation: Reference

Issue - State: closed - Opened by clementpoiret over 2 years ago - 6 comments

#50 - mriSuperresolution in antspynet

Issue - State: open - Opened by limacora45 over 2 years ago - 8 comments

#49 - ANTsPyNet installation error: Tensorflow not found

Issue - State: closed - Opened by hegde00 over 2 years ago - 6 comments

#48 - How do I get `antspynet.utilities.cortical_thickness` to work on other contrasts?

Issue - State: closed - Opened by dangom over 2 years ago - 2 comments

#47 - image reconstruction with masked patches

Issue - State: closed - Opened by stnava almost 3 years ago - 3 comments

#46 - Inconsistent patch size from antspynet.extract_image_patches

Issue - State: closed - Opened by stnava almost 3 years ago - 13 comments

#45 - FIX: to neural assessment and BXT

Pull Request - State: closed - Opened by stnava almost 3 years ago - 7 comments

#44 - OOM error when I use brain_extraction function with 't1nobrainer'

Issue - State: closed - Opened by XiDeng almost 3 years ago - 4 comments

#43 - Conflicting dependencies (Apple Silicon M1 hardware Monterey 12.0.1)

Issue - State: closed - Opened by htrivino20 about 3 years ago - 6 comments

#42 - Brain extraction

Issue - State: closed - Opened by XL258 about 3 years ago - 2 comments

#41 - closest_simplified_direction_matrix bug + bounding box artifact

Issue - State: open - Opened by stnava about 3 years ago - 3 comments

#40 - Question about AntsPyNet cortical_thickness.py outputs

Issue - State: closed - Opened by KrisReynier about 3 years ago - 4 comments

#39 - Regarding ANTsPyNet's pre-trained models

Issue - State: closed - Opened by aksh-ai about 3 years ago - 2 comments

#38 - keras import cleanup

Pull Request - State: closed - Opened by ravnoor over 3 years ago - 1 comment

#37 - resnet3d inconsistency with ANTsRNet

Issue - State: closed - Opened by stnava over 3 years ago - 5 comments

#36 - ValueError: `type_of_transform` does not exist using recent version

Issue - State: closed - Opened by anant-dadu over 3 years ago - 3 comments