ANTsX/ANTsPy issues and pull requests

#409 - The 2D registration results are dark

Issue - State: open - Opened by LexTran almost 2 years ago - 7 comments

#408 - Point transformation does not match image transformation after landmark registration

Issue - State: closed - Opened by dakota-hawkins almost 2 years ago - 3 comments

#407 - WIP: Add xfrm option for BRATs pipeline.

Pull Request - State: closed - Opened by ntustison almost 2 years ago - 3 comments

#406 - Vector field

Issue - State: closed - Opened by ninusch almost 2 years ago - 1 comment

#405 - cosineWindowedSinc option for resampling functions not working

Issue - State: closed - Opened by spichardo almost 2 years ago - 1 comment

#404 - Error converting an image from template space to subject space

Issue - State: closed - Opened by kspruthviraj almost 2 years ago - 1 comment

#403 - Affine registration of T1 to T2star (Brain MRI) Problem

Issue - State: closed - Opened by DimitriosGk almost 2 years ago - 10 comments

#402 - Cannot run ants.registration in HPC (slurm)

Issue - State: closed - Opened by mikami520 about 2 years ago - 14 comments

#401 - Creating Templates with Masks

Issue - State: closed - Opened by FIrgolitsch about 2 years ago - 1 comment

#400 - Different results using ants.image_write and .numpy()

Issue - State: closed - Opened by d5423197 about 2 years ago - 2 comments

#399 - Draft: Segmentation fault in `atropos()` if more than 9 temporary files are created

Pull Request - State: closed - Opened by phistep about 2 years ago - 1 comment

#398 - Why isn't there a windows version? Compiled whl files

Issue - State: closed - Opened by 464hee about 2 years ago - 25 comments
Labels: enhancement, help wanted

#397 - ENH: Add access to spline distance.

Pull Request - State: closed - Opened by ntustison about 2 years ago

#396 - resampling to new voxel

Issue - State: closed - Opened by dilekozkan about 2 years ago - 12 comments

#395 - ENH: Add multi-metric for antsRegistrationSyN family

Pull Request - State: closed - Opened by ntustison about 2 years ago

#394 - ENH: Remove learn rate once option.

Pull Request - State: closed - Opened by ntustison about 2 years ago

#393 - Different result when the type_of_transform is 'antsRegistrationSyNRepro[r]' and 'Affine'

Issue - State: closed - Opened by conglin10 about 2 years ago - 1 comment

#392 - deformation fields as manipulatable numpy arrays?

Issue - State: closed - Opened by samtorrisi about 2 years ago - 7 comments

#391 - No wheel available for python 3.10 on PyPI

Issue - State: closed - Opened by JescoS about 2 years ago - 1 comment

#390 - plot failed with axis =2

Issue - State: closed - Opened by ibowennn about 2 years ago - 1 comment

#389 - BUG: kelly_kapowski its parameter needs brackets

Pull Request - State: closed - Opened by cookpa about 2 years ago - 1 comment

#388 - Kelly Kapowski algorithm for computing cortical thickness takes too long to execute

Issue - State: closed - Opened by InderdeepSync about 2 years ago - 34 comments

#387 - add a link to the discussion

Pull Request - State: closed - Opened by haesleinhuepf about 2 years ago

#386 - Opening figures in docker

Issue - State: closed - Opened by gaucijean about 2 years ago - 2 comments

#385 - Multi resolution (quantitatively)/"reg_iterations"

Issue - State: closed - Opened by ninusch about 2 years ago - 1 comment

#384 - right operands not implemented

Issue - State: closed - Opened by rueberger over 2 years ago - 1 comment

#383 - Hotfix 380

Pull Request - State: closed - Opened by rueberger over 2 years ago - 3 comments

#382 - Hotfix 378

Pull Request - State: closed - Opened by rueberger over 2 years ago - 1 comment

#381 - installations issues with CentOS7 affecting 0.3.3 and 0.3.2

Issue - State: closed - Opened by rueberger over 2 years ago - 1 comment

#380 - non-halting states in apply_transforms

Issue - State: closed - Opened by rueberger over 2 years ago - 6 comments

#379 - Troubles in converting ANTsImage to PIL image.

Issue - State: open - Opened by gentlezr over 2 years ago

#378 - Registration is not deterministic

Issue - State: open - Opened by rueberger over 2 years ago - 3 comments

#377 - ENH: Show registration command line options if verbose

Pull Request - State: closed - Opened by cookpa over 2 years ago - 2 comments

#373 - wildcard imports in init.py

Issue - State: closed - Opened by poldrack over 2 years ago - 1 comment

#372 - outprefix behaves improperly for motion_correction workflow

Issue - State: closed - Opened by poldrack over 2 years ago - 3 comments

#369 - WIP: buildx Docker CI with Github Actions

Pull Request - State: closed - Opened by cookpa over 2 years ago - 1 comment

#368 - Possible to install on top of existing ANTs install

Issue - State: closed - Opened by blakedewey over 2 years ago - 3 comments

#365 - apply_transforms docstring is misleading

Issue - State: closed - Opened by rueberger over 2 years ago

#362 - ants.motion_correction fails for micron-sized voxels

Issue - State: open - Opened by poldrack over 2 years ago - 11 comments

#358 - finding some properties of antsRegistration in ants.registration

Issue - State: open - Opened by amirreza1998 over 2 years ago - 1 comment

#356 - Registration of two FA images - Output is flipped

Issue - State: closed - Opened by imagingn over 2 years ago - 6 comments

#347 - find equivalent for command line tool in antspy

Issue - State: closed - Opened by amirreza1998 over 2 years ago - 1 comment

#346 - Compile with shared ITK/VTK to reduce wheel size

Pull Request - State: open - Opened by aganders3 over 2 years ago - 8 comments

#345 - Using Github CI to generate wheels and compiling to Windows too.

Pull Request - State: closed - Opened by tfmoraes over 2 years ago - 10 comments

#342 - PyPI release 0.2.9 seems to have been pulled?

Issue - State: closed - Opened by ruidc over 2 years ago - 3 comments

#341 - Problem with ants import

Issue - State: closed - Opened by codeenthusiast over 2 years ago - 7 comments

#338 - Inconsistent interpolation calls

Issue - State: closed - Opened by mbramerloh over 2 years ago - 7 comments

#335 - Fail to install ANTsPyx on Mac M1

Issue - State: closed - Opened by mikami520 over 2 years ago - 22 comments

#332 - methods missing from documentation

Issue - State: closed - Opened by rueberger over 2 years ago - 1 comment

#328 - Consider adopting PEP-8

Issue - State: closed - Opened by rueberger over 2 years ago - 2 comments

#322 - ANTsPy help

Issue - State: closed - Opened by MostafaI over 2 years ago - 1 comment

#321 - Error installing ANTsPyx on mac

Issue - State: closed - Opened by mayayab over 2 years ago - 2 comments

#316 - Faliure to build on Arch Linux with python 3.8

Issue - State: closed - Opened by mark-dawn over 2 years ago - 1 comment

#315 - Negative mutual information

Issue - State: closed - Opened by IlvaHou55 over 2 years ago - 2 comments

#309 - Minimizing deformation when applying registration with two identical images

Issue - State: closed - Opened by IlvaHou55 almost 3 years ago - 8 comments

#308 - Is the pse metric available through antspy.

Issue - State: closed - Opened by cakeinspace almost 3 years ago

#304 - Importing antspynet error

Issue - State: closed - Opened by celstark almost 3 years ago - 2 comments

#302 - How to change the default saved path for transform

Issue - State: closed - Opened by colddie almost 3 years ago - 8 comments

#301 - ANTsPy for windows

Issue - State: closed - Opened by sulaimanvesal almost 3 years ago - 8 comments

#287 - Refactor get_ants_data

Pull Request - State: closed - Opened by ntustison about 3 years ago

#267 - Why are the images corrected by antspy vague, like adding a mismatched mask? THANKS

Issue - State: closed - Opened by markvvw over 3 years ago - 5 comments

#225 - ants (on linux) does not give a brain extracted.

Issue - State: closed - Opened by s-j-choi almost 4 years ago - 3 comments

#219 - ENH: expose additional parameters.

Pull Request - State: closed - Opened by ntustison almost 4 years ago

#215 - Improve viz.plot's input validation

Pull Request - State: closed - Opened by rueberger about 4 years ago - 2 comments

#213 - Conda distribution via conda-forge

Issue - State: open - Opened by oesteban about 4 years ago - 40 comments

#200 - Padding ---> Cropping: indices issue?

Issue - State: closed - Opened by ntustison about 4 years ago - 2 comments
Labels: bug

#181 - Tractogram linear and non-linear warp

Issue - State: closed - Opened by pietroastolfi over 4 years ago - 2 comments

#176 - get_center_of_mass() blows up, if image intensity mean is close to zero.

Issue - State: closed - Opened by MaximilianHoffmann over 4 years ago - 33 comments

#169 - ENH: Add testing for recent commits.

Pull Request - State: closed - Opened by ntustison over 4 years ago - 6 comments

GitHub / ANTsX/ANTsPy issues and pull requests