Ecosyste.ms: Issues

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GitHub / ANTsX/ANTsPy issues and pull requests

#581 - PyPI updating strategy

Issue - State: open - Opened by cookpa 4 months ago - 13 comments
Labels: question, distribution

#580 - ENH: Multiple CI changes

Pull Request - State: closed - Opened by cookpa 4 months ago - 1 comment

#579 - KK discrepancies

Issue - State: closed - Opened by ntustison 4 months ago - 14 comments
Labels: bug

#578 - antspy to v0.5.0 and bump ants + itk versions to latest commit hashes

Pull Request - State: closed - Opened by ncullen93 4 months ago - 9 comments

#577 - Update ANTs tag?

Issue - State: closed - Opened by ntustison 4 months ago - 11 comments

#576 - BUG: apply_transforms output image inherited input type

Pull Request - State: closed - Opened by cookpa 4 months ago - 2 comments

#575 - Cookpa patch 6

Pull Request - State: closed - Opened by cookpa 4 months ago - 1 comment

#574 - Unexpected values with label transformations

Issue - State: closed - Opened by FIrgolitsch 4 months ago - 40 comments

#573 - Update README.md

Pull Request - State: closed - Opened by cookpa 4 months ago

#572 - Cookpa patch 2

Pull Request - State: closed - Opened by cookpa 4 months ago

#571 - allow decrop_image to be chained

Pull Request - State: closed - Opened by ncullen93 4 months ago

#570 - fix unharmonized decrop_image arg

Pull Request - State: closed - Opened by ncullen93 4 months ago - 3 comments

#569 - test plot grid and support 2d images

Pull Request - State: closed - Opened by ncullen93 4 months ago

#568 - Add more plotting tests

Pull Request - State: closed - Opened by ncullen93 4 months ago

#567 - Reduce CI workflow run time

Issue - State: closed - Opened by cookpa 4 months ago - 7 comments
Labels: distribution, feature request

#566 - BUG: Check for zero image in plot

Pull Request - State: closed - Opened by cookpa 4 months ago

#565 - change required slice_image args

Pull Request - State: closed - Opened by ncullen93 4 months ago

#564 - COMP: Debugging output in runners

Pull Request - State: closed - Opened by cookpa 4 months ago - 1 comment

#563 - fix small doc typo

Pull Request - State: closed - Opened by ncullen93 4 months ago

#562 - fix issue with plotting negative-sum images

Pull Request - State: closed - Opened by ncullen93 4 months ago - 8 comments

#561 - ENH: avoid kelly_kapowski returning GMP

Pull Request - State: closed - Opened by cookpa 4 months ago

#560 - ENH: Coordinate with other n4 usage.

Pull Request - State: closed - Opened by ntustison 4 months ago

#559 - mask default in n4_bias_field_correction

Issue - State: closed - Opened by ntustison 4 months ago

#558 - DOC: Update issue template

Pull Request - State: closed - Opened by cookpa 4 months ago

#557 - ENH: ARM64 builds

Pull Request - State: closed - Opened by cookpa 4 months ago

#556 - ENH: More specific error messages if atropos fails

Pull Request - State: closed - Opened by cookpa 4 months ago

#555 - Error: no module named ants.lib.addNoiseToImage

Issue - State: closed - Opened by QuentinMesnildrey 4 months ago - 5 comments

#554 - ants.atropos probimgs = [iio2.image_read(probsout[0])]

Issue - State: closed - Opened by rachelglenn 4 months ago - 8 comments

#553 - [question/feature quest] how to translate ANTs CLI call to Python call?

Issue - State: closed - Opened by neuronflow 4 months ago - 1 comment

#552 - Descrepancy in performance of AntsPy Behaviour when running in a loop for a long time.

Issue - State: open - Opened by tushaarkataria 4 months ago - 7 comments
Labels: help wanted

#551 - Test viz png

Pull Request - State: closed - Opened by cookpa 4 months ago - 3 comments

#550 - try testing viz again

Pull Request - State: closed - Opened by ncullen93 5 months ago

#549 - ANTsImage operators don't work on Windows for right-sided operations

Issue - State: open - Opened by cookpa 5 months ago - 3 comments
Labels: help wanted

#548 - ENH: Support different segmentation labels in kelly_kapowski

Pull Request - State: closed - Opened by cookpa 5 months ago

#547 - rightside ops

Pull Request - State: closed - Opened by ncullen93 5 months ago

#546 - cannot import name 'int64index' from python

Issue - State: closed - Opened by Santhu489 5 months ago - 2 comments

#545 - ENH: Don't need extra parameter for branch

Pull Request - State: closed - Opened by cookpa 5 months ago

#544 - ENH: Set path to source for coverage tests

Pull Request - State: closed - Opened by cookpa 5 months ago - 5 comments

#543 - ENH: allow workflow dispatch

Pull Request - State: closed - Opened by cookpa 5 months ago

#542 - WIP: Attempting to fix coverage reports on coveralls

Pull Request - State: closed - Opened by cookpa 5 months ago - 1 comment

#541 - Code cov

Pull Request - State: closed - Opened by ncullen93 5 months ago - 3 comments

#540 - just doing some testing github actions on PRs

Pull Request - State: closed - Opened by ncullen93 5 months ago

#539 - ENH: Histogram equalization

Pull Request - State: closed - Opened by ntustison 5 months ago

#538 - TEST: try black gha on PR

Pull Request - State: closed - Opened by ncullen93 5 months ago

#537 - remove all R_PACKAGE_LIB refs

Pull Request - State: closed - Opened by ncullen93 5 months ago

#536 - Erroneous R_PACKAGE_LIBS reference in configure_ITK.sh

Issue - State: closed - Opened by ncullen93 5 months ago

#535 - update reg docs

Pull Request - State: closed - Opened by ncullen93 5 months ago

#534 - make interpolation case-insensitive

Pull Request - State: closed - Opened by ncullen93 5 months ago

#533 - Explicit imports

Pull Request - State: closed - Opened by ncullen93 5 months ago

#532 - improve test coverage or start tracking again

Issue - State: closed - Opened by ncullen93 5 months ago - 5 comments
Labels: would be nice

#531 - need help to install antspyx==0.2.4

Issue - State: closed - Opened by tora-olsson 5 months ago - 1 comment

#530 - Wheel builds for arm64 on Github Actions

Issue - State: closed - Opened by cookpa 5 months ago - 1 comment
Labels: distribution

#529 - DOC: Update aff_sampling docstring in interface.py

Pull Request - State: closed - Opened by dzenanz 5 months ago

#528 - What is the correct way to conduct PET-MR coregistration?

Issue - State: closed - Opened by tctco 5 months ago - 9 comments

#527 - Refactor CI for PyPI

Pull Request - State: open - Opened by ravnoor 5 months ago

#526 - ENH: allow setting of fixed_parameters when creating a transform

Pull Request - State: closed - Opened by cookpa 6 months ago

#525 - Cannot re-create affine transform from parameters

Issue - State: closed - Opened by jeroen-aidence 6 months ago - 8 comments

#523 - Update configure_ANTsPy.sh

Pull Request - State: closed - Opened by crossmanith 6 months ago - 1 comment

#521 - Distutils

Pull Request - State: closed - Opened by ravnoor 7 months ago

#519 - Unable to pip install antspyx on MacBook (M2)

Issue - State: closed - Opened by DavidTadres 7 months ago - 6 comments

#518 - B-spline SyN registration has too few control points

Issue - State: closed - Opened by dipterix 7 months ago - 7 comments

#517 - deblur in a single dimension?

Issue - State: open - Opened by samtorrisi 7 months ago - 2 comments

#516 - STYLE: Remove unused CLI mangling code

Pull Request - State: closed - Opened by cookpa 7 months ago

#515 - tidy "NO CLUE WHAT THIS DOES OR WHY IT'S NEEDED"

Issue - State: closed - Opened by LeeReid1 7 months ago - 2 comments

#514 - nrrd spatial units not properly handled

Issue - State: closed - Opened by rueberger 8 months ago - 1 comment

#511 - estSmooth() in antspy?

Issue - State: closed - Opened by samtorrisi 8 months ago - 5 comments

#510 - COMP: Add support for Python 3.12

Pull Request - State: closed - Opened by ravnoor 9 months ago - 15 comments

#509 - cannot import name '_centered' from 'scipy.signal.signaltools'

Issue - State: closed - Opened by Abhi-Gan 9 months ago - 2 comments
Labels: distribution

#508 - cannot import name 'Int64Index' from 'pandas' (deprecated)

Issue - State: open - Opened by Abhinav-Ganesh 9 months ago - 2 comments

#507 - Rotation only registration

Issue - State: open - Opened by bradfeiger 9 months ago - 1 comment

#506 - Request for ANTsPy version of ConvertImagePixelType in ANTs

Issue - State: closed - Opened by novafae 10 months ago - 1 comment
Labels: feature request

#505 - Affine updates

Pull Request - State: closed - Opened by seogier 11 months ago - 1 comment

#504 - Points transform is erroneous for ‘SyNRA’ registration

Issue - State: open - Opened by MariaBurd 11 months ago - 1 comment

#503 - Releases prior to 0.3.8 yanked?

Issue - State: closed - Opened by kmannislands 11 months ago - 6 comments

#502 - Automating wheel uploads to PyPi

Issue - State: closed - Opened by stnava 11 months ago - 3 comments

#501 - Building wheel always fails

Issue - State: open - Opened by skeletonyyy 11 months ago - 3 comments

#499 - How can I transform two CTs with a known affine transformation matrix?

Issue - State: open - Opened by angolin22 11 months ago - 6 comments

#498 - ants.convolve_image bug

Issue - State: open - Opened by pogos-ed 11 months ago - 4 comments

#497 - Problem with using ants.image_similarity

Issue - State: open - Opened by Mo-Junyang 11 months ago - 5 comments

#496 - problem with 3d registration

Issue - State: open - Opened by esther1262 12 months ago - 4 comments

#495 - Can not quit python after generating image file using ants.write_image

Issue - State: closed - Opened by NemesisAmos 12 months ago - 1 comment

#494 - Rotation in registration module

Issue - State: closed - Opened by Volodimirich 12 months ago - 4 comments

#493 - Question about registration

Issue - State: closed - Opened by Volodimirich 12 months ago

#492 - corrected docstrings for affine transformations

Pull Request - State: closed - Opened by seogier 12 months ago - 1 comment

#491 - Confusion regarding the use of create_jacobian_determinant_image

Issue - State: closed - Opened by YasmineMH1997 12 months ago - 7 comments

#490 - Having trouble installing ANTS.

Issue - State: closed - Opened by YasmineMH1997 12 months ago - 7 comments

#489 - ENH: Update ANTs git tag.

Pull Request - State: closed - Opened by ntustison almost 1 year ago - 1 comment

#488 - ENH: Allow multiple initial transforms

Pull Request - State: closed - Opened by cookpa almost 1 year ago

#487 - ANTsPy does not install (from source)

Issue - State: open - Opened by rohitrango about 1 year ago - 4 comments

#486 - Inverse Transforms Result in a Blank Image

Issue - State: closed - Opened by FIrgolitsch about 1 year ago - 4 comments

#485 - Kmeans_segmentation - Probability Map

Issue - State: closed - Opened by ninea-anasovi about 1 year ago - 6 comments

#484 - Tutorials for T1 brain imaging processing

Issue - State: closed - Opened by dipterix about 1 year ago - 5 comments

#483 - COMP: Migrate RTD to new config

Pull Request - State: closed - Opened by cookpa about 1 year ago

#482 - ants.plot() issue on Mac M1 with python 3.11

Issue - State: closed - Opened by roohy466 about 1 year ago - 5 comments

#481 - Build wheel for cp37-macosx_x86_64 fails

Issue - State: open - Opened by cookpa about 1 year ago - 1 comment
Labels: distribution