Ecosyste.ms: Issues

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GitHub / ANTsX/ANTs issues and pull requests

#1794 - Regarding DBM, in Jacobian group analysis

Issue - State: open - Opened by JinDJsuper 13 days ago - 8 comments

#1793 - BUG: float type for posterior sum caused overflow on large images

Pull Request - State: closed - Opened by cookpa 28 days ago - 1 comment

#1790 - Can't find the end-to-end segmentation scripts

Issue - State: open - Opened by stephen-q-le 30 days ago - 1 comment

#1788 - Build multiple templates into one

Issue - State: open - Opened by YUZHENG6 about 1 month ago - 2 comments

#1787 - about registration changed SNR of of the original image

Issue - State: closed - Opened by JinDJsuper about 2 months ago - 5 comments

#1786 - ResampleImage command yields no output

Issue - State: closed - Opened by Nagle2036 about 2 months ago - 11 comments

#1785 - BUG: Fix script usage

Pull Request - State: closed - Opened by cookpa about 2 months ago

#1784 - about problem of using antsAtroposN4 to segmentation brain

Issue - State: closed - Opened by JinDJsuper about 2 months ago - 5 comments

#1783 - ENH: CI updates

Pull Request - State: closed - Opened by cookpa about 2 months ago

#1781 - DOC: Fix wrong link for ANTsPy in README

Pull Request - State: closed - Opened by NicolasGensollen about 2 months ago - 1 comment

#1779 - BUG: VAR=0; ((VAR++)) fails on Linux but not on Mac

Pull Request - State: closed - Opened by cookpa 2 months ago

#1778 - BUG: fixing tags again

Pull Request - State: closed - Opened by cookpa 2 months ago

#1776 - BUG: Fix release tags

Pull Request - State: closed - Opened by cookpa 2 months ago

#1774 - Registration of Labelled Images vs Interpolation During Registration

Issue - State: closed - Opened by alund 2 months ago - 3 comments

#1773 - ants的配准结果问题

Issue - State: closed - Opened by Enzo2357 2 months ago - 1 comment

#1772 - antsMultivariateTemplateConstruction2.sh error "GLIBC not found"

Issue - State: closed - Opened by YUZHENG6 2 months ago - 9 comments

#1771 - ENH: write template output such that things sort together

Pull Request - State: closed - Opened by cookpa 2 months ago - 3 comments

#1767 - BUG: Address degenerate case.

Pull Request - State: closed - Opened by ntustison 3 months ago - 1 comment

#1765 - Atropos - Error when using 3 class tissue segmentation

Issue - State: closed - Opened by grahamlittlephd 3 months ago - 19 comments
Labels: bug

#1763 - Problem about brain extraction and segmentation

Issue - State: closed - Opened by windyjunfeng 3 months ago - 2 comments

#1762 - BUG: intermediate template file names

Pull Request - State: closed - Opened by cookpa 3 months ago

#1758 - About interpolation with tranfomation matric by Ants

Issue - State: closed - Opened by apple1986 3 months ago - 2 comments

#1757 - BUG: Manifold parzen windows.

Pull Request - State: closed - Opened by ntustison 3 months ago - 1 comment

#1756 - Atropos - Segmentation fault (core dumped)

Issue - State: closed - Opened by arnaudbore 3 months ago - 2 comments

#1755 - use in docker

Issue - State: closed - Opened by Schwarao 4 months ago - 4 comments

#1754 - how to interpret the transformation matrix?

Issue - State: closed - Opened by wangtianyipsy 4 months ago - 5 comments

#1752 - DOC: Create CITATION.cff

Pull Request - State: closed - Opened by cookpa 4 months ago - 4 comments

#1751 - ENH: Add Ubuntu 24.04

Pull Request - State: closed - Opened by gdevenyi 4 months ago - 9 comments

#1750 - ENH: update and reformat README

Pull Request - State: closed - Opened by ncullen93 4 months ago - 4 comments

#1749 - REQUEST: rewrite the readme?

Issue - State: closed - Opened by ncullen93 4 months ago - 10 comments

#1748 - CI: Docker tags

Pull Request - State: closed - Opened by cookpa 4 months ago

#1745 - Building template in ANTs

Issue - State: closed - Opened by ndescalco 4 months ago - 6 comments

#1744 - ResampleImage usage

Issue - State: closed - Opened by devDonnn 4 months ago - 3 comments

#1743 - ENH: Make eccentricity more similar to elongation

Pull Request - State: closed - Opened by cookpa 5 months ago

#1742 - running ANTs binaries on a windows laptop reports error: "could not find VCRUNTIME140_1.dll"

Issue - State: closed - Opened by citystrawman 5 months ago - 2 comments
Labels: help needed

#1741 - Remove deprecated label geometry filter

Pull Request - State: closed - Opened by cookpa 5 months ago - 1 comment

#1740 - COMP: Remove warnings.

Pull Request - State: closed - Opened by ntustison 5 months ago

#1739 - ENH: More than 10 modalities.

Pull Request - State: closed - Opened by ntustison 5 months ago

#1738 - ENH: Allow for more than 10 modalities.

Pull Request - State: closed - Opened by ntustison 5 months ago - 1 comment

#1737 - ENH: Update LabelGeometryMeasures to not use deprecated filter

Pull Request - State: closed - Opened by cookpa 5 months ago - 4 comments

#1735 - Error message at antsApplyTransform

Issue - State: closed - Opened by didatto 5 months ago - 6 comments

#1734 - Optimizing EPI to T1 MPRAGE registration

Issue - State: closed - Opened by nickcicero18 5 months ago - 4 comments

#1733 - Deprecation of LabelGeometryImageFilter (used in LabelGeometryMeasures)

Issue - State: closed - Opened by cookpa 5 months ago - 12 comments
Labels: enhancement

#1732 - CI: Drop v from release versions

Pull Request - State: closed - Opened by cookpa 5 months ago

#1731 - Multivariate template construction with > 10 modalities

Issue - State: closed - Opened by ntustison 5 months ago - 2 comments

#1729 - Use structured form for tech support requests

Pull Request - State: closed - Opened by cookpa 5 months ago

#1726 - ANTs and SPM compatibility

Issue - State: open - Opened by lisajeschke 5 months ago - 3 comments
Labels: help needed

#1725 - Segmentation-aware template building

Issue - State: open - Opened by tmspvn 5 months ago - 3 comments

#1724 - Can't extract brain from skull on T1-weighed MRI images

Issue - State: closed - Opened by ValeriePineauNoel 5 months ago - 13 comments

#1723 - Use ants image in docker to complete registration

Issue - State: closed - Opened by Schwarao 5 months ago - 19 comments

#1722 - ENH: Add dimension 4.

Pull Request - State: closed - Opened by ntustison 5 months ago

#1721 - antsApplyTransforms allows `-d 4` with a 3D warp field

Issue - State: closed - Opened by cookpa 5 months ago - 2 comments
Labels: wontfix, notes about usage

#1720 - BUG: Should not assume DIM=3

Pull Request - State: closed - Opened by cookpa 5 months ago - 1 comment

#1719 - Fix hardcoded dimension in template construction

Pull Request - State: closed - Opened by mabulnaga 5 months ago

#1717 - antsApplyTransforms on 4D BOLD images

Issue - State: closed - Opened by lisajeschke 5 months ago - 6 comments

#1716 - ENH: make lesion image uint16 to allow more than 255 lesions

Pull Request - State: closed - Opened by cookpa 5 months ago

#1714 - Jacobian through single-subject template

Issue - State: open - Opened by dbrennan44 6 months ago - 15 comments

#1713 - Ubuntu ANTs build is broken (repository version)

Issue - State: closed - Opened by gdevenyi 6 months ago - 2 comments
Labels: help needed

#1712 - Refactor antsTransformInfo to add some error handling and compute determinant

Pull Request - State: closed - Opened by gdevenyi 6 months ago - 13 comments

#1711 - Workflow for building registration using docker

Issue - State: closed - Opened by Schwarao 6 months ago - 4 comments

#1710 - BUG: iMath Truncate failed on images with negative intensities

Pull Request - State: closed - Opened by cookpa 6 months ago

#1708 - iMath TruncateImageIntensity segfaults on certain input

Issue - State: closed - Opened by cookpa 6 months ago - 3 comments
Labels: bug

#1707 - Unclosed brackets not detected in antsRegistration command line parameters

Issue - State: open - Opened by LeeReid1 6 months ago - 3 comments
Labels: bug, wouldbenice, notes about usage

#1705 - COMP: Cancel previous ci builds

Pull Request - State: closed - Opened by cookpa 6 months ago - 1 comment

#1704 - Concurrency fix

Pull Request - State: closed - Opened by cookpa 6 months ago

#1703 - Ci workflow cancel test

Pull Request - State: closed - Opened by cookpa 6 months ago

#1700 - antsRegistrationSyN.sh -t so fail

Issue - State: closed - Opened by dulaoda520 6 months ago - 4 comments

#1698 - BUG: KellyKapowski could not infer dimensionality from input

Pull Request - State: closed - Opened by cookpa 6 months ago

#1697 - ENH: Suppress "Bad Rotation Matrix" warnings

Pull Request - State: closed - Opened by dzenanz 6 months ago - 11 comments

#1694 - ENH: Check input for antsApplyTransforms matches dimensionality

Pull Request - State: closed - Opened by cookpa 7 months ago - 1 comment

#1693 - antsApplyTransforms should check input type

Issue - State: closed - Opened by cookpa 7 months ago
Labels: enhancement

#1677 - web interface / gui for ANTs?

Issue - State: closed - Opened by ncullen93 7 months ago - 10 comments

#1664 - Atropos with `-k ManifoldParzenWindows` results in a segmentation fault

Issue - State: closed - Opened by cookpa 8 months ago - 8 comments
Labels: bug, help needed

#1663 - BUG: Stop segmentation fault when Atropos is multi-threaded

Pull Request - State: closed - Opened by cookpa 8 months ago - 4 comments

#1649 - Poor non-linear registration (SyN) for intra-participant T1 to fMRI EPI

Issue - State: closed - Opened by sara110rm 8 months ago - 1 comment

#1587 - Build/Install Defaults & Binaries -- Static vs Shared

Issue - State: open - Opened by gdevenyi about 1 year ago - 3 comments
Labels: feature request

#1489 - Target "antsUtilities" links to: GTest::GTest but the target was not found.

Issue - State: closed - Opened by yurivict over 1 year ago - 1 comment

#1464 - Revisit random seed options in ANTs

Issue - State: closed - Opened by cookpa almost 2 years ago - 7 comments

#1335 - Issue with Point Set Metrics in antsRegistration

Issue - State: closed - Opened by jjbouza over 2 years ago - 25 comments
Labels: unsolved mysteries

#1297 - Still new to Structural MRI analysis. Is it possible to use multiple priors?

Issue - State: closed - Opened by birkenstonks over 2 years ago - 13 comments

#1238 - Longitudinal ANTs CT underestimating individual scans, not template

Issue - State: closed - Opened by dbrennan44 about 3 years ago - 9 comments

#1235 - ANTs on the new Apple M1 chip set

Issue - State: closed - Opened by nSpotorno about 3 years ago - 21 comments

#1201 - LesionFilling error

Issue - State: closed - Opened by enrit over 3 years ago - 3 comments
Labels: wouldbenice

#1143 - Ants Cortical Thickness missing Gray Matter - perhaps contrast issue?

Issue - State: closed - Opened by dbrennan44 over 3 years ago - 13 comments

#1096 - antsAtroposN4.sh needs registered prior maps?

Issue - State: closed - Opened by dbrennan44 almost 4 years ago - 11 comments

#939 - Please use the issue templates

Issue - State: open - Opened by cookpa over 4 years ago

#741 - Negative correlations with sparseDecom2

Issue - State: closed - Opened by rosebruf over 5 years ago - 18 comments

#600 - iMath has many undocumented functions

Issue - State: open - Opened by gdevenyi over 6 years ago - 1 comment

#448 - a few ANTs related things

Issue - State: closed - Opened by satra over 7 years ago
Labels: notes about usage

#397 - bash scripts don't catch errors

Issue - State: open - Opened by gdevenyi over 7 years ago - 7 comments
Labels: help needed

#368 - Feature Idea/Request: HistogramMatch in antsRegistration using mask if provided

Issue - State: open - Opened by gdevenyi almost 8 years ago - 14 comments
Labels: wouldbenice

#100 - COMP: Rearranged ImageMath function

Pull Request - State: closed - Opened by Chaircrusher about 10 years ago - 1 comment