Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / AMP-SCZ/lochness issues and pull requests

#151 - Impl. duplicates identification

Pull Request - State: open - Opened by dheshanm 4 months ago - 1 comment

#150 - Lochness XNAT with dataorc

Pull Request - State: closed - Opened by kcho 6 months ago

#149 - feat: cleaning up s3 sync log and adding a sync_data_to_aws.py

Pull Request - State: open - Opened by kcho 6 months ago

#148 - feat: kill dataorc once finish downloading

Pull Request - State: closed - Opened by kcho 6 months ago

#147 - UPENN datatype to pull information from two redcap projects

Pull Request - State: open - Opened by kcho 7 months ago

#146 - feat: pronet metadata to be under protected

Pull Request - State: closed - Opened by kcho 7 months ago

#145 - Metadata loc change

Pull Request - State: closed - Opened by kcho 7 months ago

#144 - feat: metadata to be under PROTECTED

Pull Request - State: closed - Opened by kcho 7 months ago - 1 comment

#143 - feat: reuse xnat connection

Pull Request - State: open - Opened by kcho 7 months ago

#142 - Reuse xnat session from `xnat.connect()` outside `sync_xnatpy` function

Issue - State: open - Opened by kcho 7 months ago
Labels: enhancement

#141 - fix: Box checksum

Pull Request - State: closed - Opened by kcho 8 months ago

#140 - fix: Ignore all *.conf files for Interview modality.

Pull Request - State: closed - Opened by dheshanm 8 months ago
Labels: enhancement

#139 - Stop flagging `*.conf` from PRESCIENT Out of SOP emails

Issue - State: closed - Opened by dheshanm 8 months ago - 1 comment
Labels: enhancement

#138 - Multiple consent date

Pull Request - State: closed - Opened by kcho 9 months ago - 1 comment

#137 - Subjects with more than one consent date

Issue - State: open - Opened by kcho 9 months ago
Labels: documentation

#136 - feat: add 'shorten' option to send_out_daily_updates

Pull Request - State: closed - Opened by kcho 9 months ago

#134 - chore: AV ignore unwanted files

Pull Request - State: closed - Opened by dheshanm 9 months ago

#133 - Fix `path_checker.py`

Pull Request - State: closed - Opened by kcho 9 months ago

#132 - fix: Check for send_email condition always before sending email.

Pull Request - State: closed - Opened by dheshanm 11 months ago

#131 - feat.: Use pexpect to provide XNAT credentials

Pull Request - State: closed - Opened by dheshanm 11 months ago

#130 - fix: update AV QC requirements

Pull Request - State: closed - Opened by dheshanm 11 months ago - 1 comment

#129 - Replacing temporary file within a context manager causes failure

Issue - State: open - Opened by tashrifbillah about 1 year ago - 4 comments

#128 - Wait for RPMS dump at different times according to AEST/AEDT

Pull Request - State: closed - Opened by tashrifbillah about 1 year ago - 3 comments

#127 - Pull latest changes

Pull Request - State: closed - Opened by tashrifbillah about 1 year ago - 1 comment

#126 - fix: mediaflux checksum

Pull Request - State: closed - Opened by kcho about 1 year ago

#125 - lochness.xnat to use XNATpy module instead of Yaxil

Pull Request - State: open - Opened by kcho about 1 year ago

#124 - Lochness update to accommodate the new Penn CNB REDCap structure

Pull Request - State: open - Opened by kcho about 1 year ago - 1 comment

#123 - Update from Prescient server to master

Pull Request - State: open - Opened by kcho about 1 year ago

#122 - Mindlamp logic update

Pull Request - State: closed - Opened by kcho about 1 year ago - 1 comment

#121 - Replace Yaxil module with python xnat

Issue - State: open - Opened by kcho over 1 year ago
Labels: enhancement

#120 - [SOP deviation email] consent date missing false flag for AMP-SCZ IDs in the Penn CNB table in the report

Issue - State: open - Opened by kcho over 1 year ago - 1 comment
Labels: bug, invalid

#119 - Do not read RPMS CSV files within 7:55-8:10 pm

Pull Request - State: closed - Opened by tashrifbillah over 1 year ago - 1 comment

#118 - fix: pd.isnull to pd.isna

Pull Request - State: closed - Opened by kcho over 1 year ago

#117 - Pronet Penn CNB update to Prescient

Pull Request - State: closed - Opened by kcho over 1 year ago

#116 - fix: replace `is nan` to `pd.isnull`

Pull Request - State: closed - Opened by kcho over 1 year ago

#115 - Less stringent PENN data matching

Pull Request - State: closed - Opened by kcho over 1 year ago - 1 comment

#114 - Sync metadata file using aws sync

Pull Request - State: closed - Opened by kcho over 1 year ago

#113 - Changes from Pronet data aggregation server

Pull Request - State: closed - Opened by kcho over 1 year ago - 2 comments

#112 - Updates in Prescient server

Pull Request - State: closed - Opened by kcho about 2 years ago - 3 comments

#111 - Prescient RPMS module to ignore csv files without change

Pull Request - State: closed - Opened by kcho over 2 years ago - 2 comments

#110 - Updates from Prescients

Pull Request - State: closed - Opened by kcho over 2 years ago

#109 - Add study column to metadata

Pull Request - State: closed - Opened by tashrifbillah over 2 years ago - 1 comment

#108 - aws s3 sync function re-uploading all the files in the Pronet network

Issue - State: open - Opened by kcho over 2 years ago - 6 comments

#107 - Extract all multi record rows

Pull Request - State: closed - Opened by tashrifbillah over 2 years ago

#106 - Extract all rows for multi-record forms

Issue - State: open - Opened by tashrifbillah over 2 years ago - 1 comment

#105 - metadata initiation using REDCap is updated to be more effective

Pull Request - State: closed - Opened by kcho over 2 years ago - 2 comments

#104 - Updates from Pronet

Pull Request - State: closed - Opened by kcho over 2 years ago

#103 - Run sheet to have digits in the file name

Pull Request - State: closed - Opened by kcho over 2 years ago - 1 comment

#102 - Rename PRESCIENT run sheets and surveys with timepoint information

Issue - State: closed - Opened by tashrifbillah over 2 years ago - 2 comments

#101 - Run sheets update

Pull Request - State: closed - Opened by kcho over 2 years ago

#100 - feat: PENN CNB REDCap included in the source file check

Pull Request - State: closed - Opened by kcho over 2 years ago

#99 - minor fix PR

Pull Request - State: closed - Opened by kcho over 2 years ago

#98 - Fix issues in the source file check

Pull Request - State: closed - Opened by kcho over 2 years ago - 1 comment

#97 - fix: DET working version

Pull Request - State: closed - Opened by kcho over 2 years ago - 3 comments

#96 - feat: exception when admin forces file permission

Pull Request - State: closed - Opened by kcho over 2 years ago

#95 - Source file check email function minor update

Pull Request - State: closed - Opened by kcho over 2 years ago

#94 - feat: to work with REDCap with different primary key

Pull Request - State: closed - Opened by kcho over 2 years ago

#93 - Merging into master

Pull Request - State: closed - Opened by kcho over 2 years ago - 1 comment

#92 - fix: when metadata row does not have mindlamp ID

Pull Request - State: closed - Opened by kcho over 2 years ago

#91 - feat: replace simple subject check with Tashrif's AMPSCZ validate function

Pull Request - State: closed - Opened by kcho over 2 years ago - 1 comment

#90 - To extract run-sheets in Prescient RPMS outputs

Pull Request - State: closed - Opened by kcho over 2 years ago

#89 - Prescient network configured to send source-check email daily

Pull Request - State: closed - Opened by kcho over 2 years ago - 1 comment

#88 - Keep the row with the most recent modification for each visit and subject

Pull Request - State: closed - Opened by kcho almost 3 years ago

#87 - feat: update logic for checking updates in RPMS table to use Pandas df.equals

Pull Request - State: closed - Opened by kcho almost 3 years ago

#86 - Remove old files that are already transferred to s3

Pull Request - State: closed - Opened by kcho almost 3 years ago - 4 comments

#85 - Kcho/pronet mindlamp test

Pull Request - State: closed - Opened by kcho almost 3 years ago

#84 - fix: cannot define value with df.iloc

Pull Request - State: closed - Opened by kcho almost 3 years ago

#83 - Update bootdey_template.html

Pull Request - State: closed - Opened by kcho almost 3 years ago

#82 - typo fix

Pull Request - State: closed - Opened by kcho almost 3 years ago

#81 - send_detail() docstring update

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago - 1 comment

#80 - feat: email summary to use mailx

Pull Request - State: closed - Opened by kcho almost 3 years ago - 2 comments

#79 - duplicate xnat_uids before for loop, clarify purporse

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago

#78 - Update requirements.txt

Pull Request - State: closed - Opened by kcho almost 3 years ago

#77 - Update requirements.txt

Pull Request - State: closed - Opened by kcho almost 3 years ago - 4 comments

#76 - feat: XNAT to pull data CAPS agnostically

Pull Request - State: closed - Opened by kcho almost 3 years ago

#75 - Unify requirements.txt and setup.py

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago - 3 comments

#74 - Kcho/requirements

Pull Request - State: closed - Opened by kcho almost 3 years ago - 7 comments

#73 - feat: to only include one dicom file name for each subject in the email

Pull Request - State: closed - Opened by kcho almost 3 years ago

#72 - Kcho/upenn redcap

Pull Request - State: closed - Opened by kcho almost 3 years ago - 5 comments

#71 - Patch 1

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago - 1 comment

#70 - Consolidate the two if conditions

Issue - State: closed - Opened by tashrifbillah almost 3 years ago - 1 comment

#69 - concise code

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago - 1 comment

#68 - Lochness Mediaflux module is slow for MRI data

Issue - State: open - Opened by kcho almost 3 years ago - 1 comment
Labels: enhancement

#67 - email functionality

Pull Request - State: closed - Opened by kcho almost 3 years ago - 5 comments

#66 - update from Prescient server

Pull Request - State: closed - Opened by kcho almost 3 years ago - 7 comments

#65 - Documentation update for readthedocs

Pull Request - State: closed - Opened by kcho almost 3 years ago - 8 comments

#64 - Remove unused **kwargs from Templates.substitute()

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago

#63 - Minor changes in doc files

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago

#62 - Possible template errors

Issue - State: closed - Opened by tashrifbillah almost 3 years ago - 9 comments

#61 - bring back old comments to facilitate git diff

Pull Request - State: closed - Opened by tashrifbillah almost 3 years ago

#60 - update from Pronet dev server

Pull Request - State: closed - Opened by kcho almost 3 years ago - 5 comments

#59 - feat: PRONET redcap record ID field name is 'chric_record_id' & box update

Pull Request - State: closed - Opened by kcho almost 3 years ago

#58 - Fix for lochness.xnat module only saving the last MRI series

Pull Request - State: closed - Opened by kcho about 3 years ago

#57 - Box to keep subdirectory structure

Pull Request - State: closed - Opened by kcho about 3 years ago

#56 - Update metadata population from RPMS database

Pull Request - State: closed - Opened by kcho about 3 years ago - 5 comments

#55 - Omit redundant Lochness['selective_sync']

Pull Request - State: closed - Opened by tashrifbillah about 3 years ago

#54 - Revert "Revert "UPENN Cognitive battery REDCap option (redcap + redcap OR rpms + redcap)""

Pull Request - State: closed - Opened by kcho about 3 years ago - 2 comments

#53 - feat: option to support data transfer for protected data

Pull Request - State: closed - Opened by kcho about 3 years ago - 4 comments