Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / AMICI-dev/AMICI issues and pull requests
#2503 - ReturnData: remove protected data members
Pull Request -
State: open - Opened by dweindl 4 days ago
- 1 comment
#2502 - CI: skip spline tests under valgrind
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2501 - Simplify SuiteSparse installation
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2500 - Update SuiteSparse to 7.8.2
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2499 - Fix sympy float comparison issue in spline code
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2498 - test_multiple_splines fails
Issue -
State: closed - Opened by dweindl 5 days ago
Labels: ci
#2497 - Release 0.26.2
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2496 - GHA: Update sonar scanner
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 2 comments
#2495 - pre-commit autoupdate
Pull Request -
State: closed - Opened by dweindl 5 days ago
- 1 comment
#2494 - GHA: cache remote test files
Pull Request -
State: closed - Opened by dweindl 6 days ago
- 1 comment
#2493 - CMake: AmiciConfig.cmake -> AmiciConfig.cmake.in
Pull Request -
State: closed - Opened by dweindl 6 days ago
- 1 comment
#2492 - Set CMake3.30 policies
Pull Request -
State: closed - Opened by dweindl 6 days ago
- 1 comment
#2491 - Assertion error in ForwardProblem::getSimulationStateTimepoint
Issue -
State: open - Opened by dweindl 13 days ago
#2490 - Test amici with no-GIL Python
Issue -
State: open - Opened by dweindl 28 days ago
#2489 - Add tests for installing amici under conda
Issue -
State: open - Opened by dweindl about 2 months ago
Labels: ci
#2488 - Tests: Fix petab benchmark models paths
Pull Request -
State: closed - Opened by dweindl about 2 months ago
- 1 comment
#2487 - Update references
Pull Request -
State: closed - Opened by dweindl about 2 months ago
- 1 comment
#2486 - Segmentation fault when importing amici on Mac
Issue -
State: open - Opened by anamariemartinez 2 months ago
- 9 comments
Labels: new
#2485 - Release 0.26.1
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2484 - Fix uncaught C++ exceptions crashing Python
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2483 - Handle reserved names during code-printing
Pull Request -
State: open - Opened by dweindl 3 months ago
- 1 comment
#2482 - Update gcc minimum required version warning
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2481 - GHA: -Werror only for amici repo
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2480 - CMake: Set CMP0167
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2479 - Wrong conservation laws for pysb models
Issue -
State: open - Opened by FFroehlich 3 months ago
Labels: bug, PySB
#2478 - Uncaught C exceptions
Issue -
State: closed - Opened by FFroehlich 3 months ago
- 7 comments
Labels: bug, c++
#2477 - GHA: -Werror only for amici repo
Issue -
State: closed - Opened by dweindl 3 months ago
Labels: ci
#2476 - Set CMP0167 for CMake 3.30
Issue -
State: closed - Opened by dweindl 3 months ago
Labels: cmake
#2475 - Survey: MATLAB users / continuation of AMICI's MATLAB interface
Issue -
State: open - Opened by dweindl 3 months ago
Labels: question, matlab
#2474 - Doc: Update installation under conda
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2473 - Release 0.26.0
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2472 - Update reference list
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2471 - Use `petab.v1`
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2470 - Doc: fix formatting
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2469 - Illegal value in CVodeGetDky
Issue -
State: open - Opened by dweindl 3 months ago
#2468 - CMake: Set SUNDIALS_ROOT
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2467 - CMake Error during AMICI installation on WSL
Issue -
State: closed - Opened by LarkinIt 3 months ago
- 4 comments
Labels: bug, cmake
#2466 - Doc: Update AMICI papers
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2465 - Add deprecation policy
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 2 comments
#2464 - Deprecate passing individual tables to `amici_import_petab`
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 2 comments
#2463 - 'reduce' is not a member of 'std' std::reduce(idlist.begin(), idlist.end())
Issue -
State: closed - Opened by derleanfv 3 months ago
- 2 comments
Labels: windows, c++, matlab
#2462 - Require sympy>=1.12.1 for numpy>=2.0 compatibility
Pull Request -
State: closed - Opened by dweindl 3 months ago
- 1 comment
#2461 - Handle reserved names in PEtab parameter mapping
Issue -
State: open - Opened by dweindl 3 months ago
- 3 comments
Labels: bug, PEtab
#2460 - Replace deprecated `petab.Problem.from_files` in `amici.petab.cli.import_petab._main`
Issue -
State: closed - Opened by dweindl 4 months ago
Labels: PEtab
#2459 - Remove deprecated functionality for PEtab import from individual files instead of petab.Problem
Pull Request -
State: closed - Opened by dweindl 4 months ago
- 2 comments
#2458 - Remove deprecated functionality for PEtab import from individual files instead of petab.Problem
Issue -
State: closed - Opened by dweindl 4 months ago
Labels: PEtab
#2457 - Release 0.25.2
Pull Request -
State: closed - Opened by dweindl 4 months ago
- 2 comments
#2456 - PEtab: Fix estimated initial conditions specified via the conditions table
Pull Request -
State: closed - Opened by dweindl 4 months ago
- 1 comment
#2455 - PEtab import: Estimated initial conditions specified via the conditions table aren't handled correctly
Issue -
State: closed - Opened by dweindl 4 months ago
Labels: bug, PEtab
#2454 - Piecewise function
Issue -
State: closed - Opened by aidinbii 4 months ago
- 1 comment
#2453 - Update doxygen to 1.11.0
Pull Request -
State: closed - Opened by dweindl 4 months ago
- 1 comment
#2452 - Timeseries
Pull Request -
State: open - Opened by FFroehlich 4 months ago
#2451 - Release 0.25.1
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2450 - TimeCourse Implementation
Issue -
State: open - Opened by FFroehlich 5 months ago
#2449 - PEtab: fix missing parameters in fill_in_parameters
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2448 - pytest: ignore log(0) warnings
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2447 - cmake: replace explicit checks for CMAKE_BUILD_TYPE
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: cmake
#2446 - Pin cmake_build_extension==0.5.1
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2445 - Specify cmake build types and require cmake-build-extension==0.6.0
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2444 - `Benchmark Collection` workflow fails for Lang_PLOSComputBiol2024
Issue -
State: closed - Opened by dweindl 5 months ago
- 2 comments
Labels: PEtab
#2443 - CMake: Fix MKL detection when not using environment modules
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2442 - IMPORTED_LOCATION not set for imported target "Upstream::amici"
Issue -
State: closed - Opened by dweindl 5 months ago
- 1 comment
Labels: bug, cmake
#2441 - Compilation fails with Intel OneApi MKL 2024.1
Issue -
State: closed - Opened by kaiserls 5 months ago
- 2 comments
Labels: cmake
#2440 - Avoid symbol clashes in plot_expressions
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2439 - Bump matlab-actions/setup-matlab from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#2438 - Bump matlab-actions/run-command from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#2437 - Bump actions/cache from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#2436 - Bump matlab-actions/setup-matlab from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#2435 - Bump matlab-actions/run-command from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 2 comments
Labels: dependencies, github_actions
#2434 - Bump actions/cache from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, github_actions
#2433 - Release 0.25.0
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2432 - Not installing on Mac M1
Issue -
State: closed - Opened by MadNietzsche 5 months ago
- 4 comments
#2431 - Fix execution of multiple event assignments from the same event
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2430 - Execution of multiple event assignments from the same event
Issue -
State: closed - Opened by dweindl 5 months ago
- 3 comments
Labels: SBML, events
#2429 - SBML import: handle `useValuesFromTriggerTime` attribute on events
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2428 - Fix handling of event assignments to compartments
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2427 - SBML import ignores `useValuesFromTriggerTime` attribute on events
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: bug, SBML, events
#2426 - Incorrect handling of event assignments to compartments
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: bug, SBML, events
#2425 - Support event-assignments to compartments that aren't rate rule targets
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2424 - Support event-assignments to compartments
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: enhancement, python, SBML, events
#2423 - Remove wurlitzer dependency
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2422 - np.Inf -> np.inf for numpy 2.0 compatibility
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2421 - Add stacklevel to warnings
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 5 comments
#2420 - Remove setup.cfg
Pull Request -
State: closed - Opened by dweindl 5 months ago
#2419 - Increase test tolerances
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2418 - InitialAssignment issue
Issue -
State: open - Opened by aidinbii 5 months ago
- 6 comments
Labels: bug, PEtab, SBML
#2417 - Faster generation of drootdt_total for models without state-dependent root functions
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2416 - GHA: Let dependabot update actions
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2415 - macos-latest tests failing since last night
Issue -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2414 - Update reference list
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2413 - Deploy releases to Docker Hub
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2412 - zip(... , strict=True)
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2411 - pyupgrade, pre-commit autoupdate
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 1 comment
#2410 - zip(... , strict=True)
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: python
#2409 - Remove wurlitzer dependency
Issue -
State: closed - Opened by dweindl 5 months ago
Labels: c++, python
#2408 - setup.cfg -> pyproject.toml
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2406 - Release 0.24.0
Pull Request -
State: closed - Opened by dweindl 5 months ago
- 2 comments
#2402 - Fix to conda installation.
Pull Request -
State: closed - Opened by BartoszBartmanski 6 months ago
- 4 comments
#2396 - Get rid of amici.swig_wrappers.ExpData
Pull Request -
State: closed - Opened by dweindl 6 months ago
- 1 comment
#2394 - cmake: set sundials path hint for python package
Issue -
State: closed - Opened by dweindl 6 months ago
Labels: cmake