Ecosyste.ms: Issues

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GitHub / AI-SDC/ACRO issues and pull requests

#149 - Dependency versions

Issue - State: closed - Opened by rpreen over 1 year ago - 4 comments
Labels: wontfix

#148 - Refactoring acro.py

Issue - State: closed - Opened by mahaalbashir over 1 year ago

#147 - fix crosstab when index or columns is a list and there is an aggregation function

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 1 comment

#146 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#145 - add survival analysis table function

Pull Request - State: closed - Opened by mahaalbashir over 1 year ago - 5 comments

#144 - across crosstab fails when index or columns is a list and when there is an aggregation function

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: bug, Sprint3

#143 - saving as .xlsx does not save unsupported outputs

Issue - State: open - Opened by jim-smith over 1 year ago - 1 comment
Labels: wontfix

#142 - 140 move stata handling to acro folder and improve formatting on screen

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 5 comments

#141 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#140 - move stata handling to acro folder and improve formatting on-screen

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: enhancement, Sprint3

#139 - 138 usability improve on screen formatting of tables sent back to researchers

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 4 comments

#138 - Usability: Improve on-screen formatting of tables sent back to researchers

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint3

#137 - Updates to table suppression

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: enhancement, Sprint3

#136 - Add support for R table function that creates crosstab of frequencies

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint3

#135 - add backward support for python38

Pull Request - State: closed - Opened by rpreen over 1 year ago - 3 comments

#134 - Added videos to ACRO_For_Researchers.md

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 1 comment

#133 - Updating the notebooks

Pull Request - State: closed - Opened by mahaalbashir over 1 year ago - 1 comment

#132 - Turn the cell suppression On and OFF

Issue - State: closed - Opened by mahaalbashir over 1 year ago

#131 - Researchers should be able to view their output in the format they specify

Issue - State: closed - Opened by mahaalbashir over 1 year ago - 2 comments
Labels: wontfix

#130 - Add a folder of outputs to acro

Pull Request - State: closed - Opened by mahaalbashir over 1 year ago - 3 comments

#129 - Finalise should checker whether the user-provided folder exists to avoid confusion with outputs from existing sessions

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: enhancement, Sprint3

#128 - Stata improvements

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment

#127 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#126 - Add rounding as a protection mechanism

Issue - State: open - Opened by rpreen over 1 year ago - 1 comment
Labels: enhancement, acro ongoing

#125 - changing the extension of the image from jfif to jpeg

Pull Request - State: closed - Opened by mahaalbashir over 1 year ago - 1 comment

#124 - Create whitelist/blacklist of allowed filetypes

Issue - State: open - Opened by jim-smith over 1 year ago - 2 comments
Labels: External info needed

#123 - change example unsupported filename from XandY.jfif to XandY.jpg or .png

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint3

#122 - Support for dataset-specific risk appetite

Issue - State: closed - Opened by jim-smith over 1 year ago - 2 comments
Labels: enhancement, Sprint3

#121 - script to create acro object post-hoc from directory of outputs

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint3

#120 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#119 - List of questions. for TREs to accompany release from sprint 2

Issue - State: closed - Opened by jim-smith over 1 year ago - 5 comments

#118 - 'acro for researchers'

Issue - State: open - Opened by jim-smith over 1 year ago
Labels: documentation

#117 - Specify Requirements for basic differencing analysis

Issue - State: open - Opened by jim-smith over 1 year ago - 1 comment
Labels: External info needed, acro ongoing

#116 - change finalise prompt to INFO and update R stuff

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment

#115 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#114 - modify output JSON to be in a file-oriented schema

Pull Request - State: closed - Opened by rpreen over 1 year ago - 4 comments

#113 - modify output JSON to be in a file-oriented schema

Issue - State: closed - Opened by rpreen over 1 year ago
Labels: enhancement, Sprint2

#112 - add explicit exception handling and finalise prompt

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment

#111 - write sdc params to config.json upon finalise

Pull Request - State: closed - Opened by rpreen over 1 year ago - 2 comments

#110 - refactor load_json Records class function to static load_results

Pull Request - State: closed - Opened by rpreen over 1 year ago

#109 - Refactor load_json function to be static rather than member of Records

Issue - State: closed - Opened by rpreen over 1 year ago
Labels: enhancement, Sprint2

#108 - Add configuration settings to the JSON metadata

Issue - State: closed - Opened by rpreen over 1 year ago
Labels: enhancement, Sprint2

#107 - add writing sha checksums for each output when finalising

Pull Request - State: closed - Opened by rpreen over 1 year ago

#106 - Adding information to flag TRE staff to look for disclosure by differencing

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: enhancement, Sprint3

#105 - return a str from print_outputs()

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment

#104 - add mask cell indexes to output properties

Pull Request - State: closed - Opened by rpreen over 1 year ago - 4 comments

#103 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#102 - Prompt researcher to add information based on the output type and status

Issue - State: closed - Opened by rpreen over 1 year ago - 1 comment
Labels: enhancement, Sprint2

#101 - Perform static type checking with mypy and fix types

Issue - State: closed - Opened by rpreen over 1 year ago
Labels: enhancement, Sprint2

#100 - Refactor the record module

Issue - State: closed - Opened by rpreen over 1 year ago
Labels: enhancement, Sprint2

#99 - support for multiple aggregation functions

Pull Request - State: closed - Opened by rpreen over 1 year ago - 4 comments

#98 - support for multiple aggregation functions

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 2 comments

#97 - fix types

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment

#96 - precommit autoformat docstrings

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment

#94 - crosstab function does not behave correctly when passed a list of aggfuncs

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: bug, Sprint2

#93 - no suppress option should say which cells need suppressing as list

Issue - State: closed - Opened by jim-smith over 1 year ago - 2 comments
Labels: invalid, Sprint2

#92 - Stata Interface

Pull Request - State: closed - Opened by jim-smith over 1 year ago - 2 comments
Labels: Sprint2

#91 - automatic table suppression disabled as default

Pull Request - State: closed - Opened by rpreen over 1 year ago - 1 comment
Labels: Sprint2

#90 - print_outputs() should return string as well a print to screen

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint2

#89 - major refactor

Pull Request - State: closed - Opened by rpreen over 1 year ago - 8 comments

#88 - Serialize outcome field as dict, not string.

Pull Request - State: closed - Opened by bloodearnest over 1 year ago - 2 comments

#87 - add __del__ method that calls finalise in css use forgets

Issue - State: closed - Opened by jim-smith over 1 year ago - 2 comments
Labels: wontfix

#86 - Update README.md

Pull Request - State: closed - Opened by jim-smith over 1 year ago

#83 - add cell detail to outcome reports as well as the mask table

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint2

#82 - Change default behaviour to not suppressing outputs

Issue - State: closed - Opened by jim-smith over 1 year ago
Labels: enhancement, Sprint2

#81 - Add description of analysis as json field

Issue - State: closed - Opened by jim-smith over 1 year ago - 1 comment
Labels: duplicate

#80 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#79 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#78 - write to excel fails if output is not a table

Issue - State: closed - Opened by jim-smith over 1 year ago - 2 comments
Labels: bug, Sprint2

#77 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#76 - Support survival table (Kaplan Meier)

Issue - State: closed - Opened by mahaalbashir over 1 year ago
Labels: enhancement, External info needed, Sprint3

#75 - Create support for pie chart in ACRO

Issue - State: open - Opened by mahaalbashir over 1 year ago
Labels: enhancement, acro ongoing

#74 - Implement more aggregation functions (Mode/Median)

Issue - State: closed - Opened by mahaalbashir over 1 year ago
Labels: enhancement, acro ongoing

#73 - In JSON output, outcomes are encoded as embedded strings, rather than as JSON objects

Issue - State: closed - Opened by bloodearnest over 1 year ago - 6 comments
Labels: invalid, Sprint2

#72 - Providing additional information in ACRO outputs

Issue - State: closed - Opened by rpreen almost 2 years ago - 5 comments
Labels: enhancement, Sprint2

#71 - Adding SDC guidance for researchers and checkers

Issue - State: open - Opened by rpreen almost 2 years ago - 3 comments
Labels: enhancement, Q for WP1

#70 - Create support for histograms in acro

Issue - State: closed - Opened by jim-smith almost 2 years ago - 3 comments
Labels: enhancement, Sprint3

#69 - Adapt example R script to use the nursery dataset

Issue - State: closed - Opened by jim-smith almost 2 years ago - 1 comment
Labels: enhancement, Sprint2

#68 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#67 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#66 - adding more description to the nursery test notebook

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 3 comments

#65 - adding test cases for the nursery dataset

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 1 comment

#64 - fix loading of existing results

Pull Request - State: closed - Opened by rpreen almost 2 years ago - 1 comment

#63 - fixes problems with nan called in masks addressing issue 62

Pull Request - State: closed - Opened by jim-smith almost 2 years ago - 10 comments

#61 - automate testing all possible tables up-front I.e. before researcher ever arrives??

Issue - State: closed - Opened by jim-smith almost 2 years ago - 2 comments
Labels: enhancement, wontfix

#60 - adding new line to the regression results in the csv files

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 4 comments

#59 - handling missing values

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 7 comments

#58 - create a function to add unsupported outputs

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 1 comment

#56 - create acro.custom_output(filename:string) for currently unsupported outputs

Issue - State: closed - Opened by jim-smith almost 2 years ago
Labels: enhancement

#55 - new release for TRE alpha testing

Issue - State: closed - Opened by jim-smith almost 2 years ago - 2 comments

#54 - Allow users to add comments to the outputs

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 1 comment

#53 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#52 - Create functionality for users to rename outputs

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago

#51 - Adding timestamps to the names of the outputs

Pull Request - State: closed - Opened by mahaalbashir almost 2 years ago - 1 comment

#50 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#49 - Create a function that converts the outputs to csv data (to_csv)

Issue - State: open - Opened by mahaalbashir almost 2 years ago - 1 comment
Labels: wontfix

#48 - output from regression results is mangled- missing newline somewhere

Issue - State: closed - Opened by jim-smith almost 2 years ago - 2 comments
Labels: enhancement

#47 - wrap all files read/writes in try/except not just "with"

Issue - State: open - Opened by jim-smith almost 2 years ago
Labels: enhancement, acro ongoing