ADicksonLab/wepy issues and pull requests

#27 - BC and REVO Resampler dashboard section not reporting correct information.

Issue - State: closed - Opened by dixonth1silicon over 3 years ago - 3 comments
Labels: enhancement

#26 - Add public method for `progress` for all boundary conditions

Issue - State: open - Opened by salotz-sitx over 3 years ago
Labels: enhancement

#25 - RebindingBC Bug

Issue - State: closed - Opened by dixonth1silicon over 3 years ago - 1 comment

#24 - Slow reading speeds of weights from HDF5s

Issue - State: open - Opened by alexrd over 3 years ago - 2 comments
Labels: enhancement, need-repro

#23 - Bump py from 1.8.1 to 1.10.0 in /.jubeo

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies, python

#22 - improve performance of `WepyHDF5.get_trace_fields`

Issue - State: open - Opened by salotz-sitx almost 4 years ago
Labels: enhancement

#21 - `json_top_subset` is too slow

Issue - State: open - Opened by salotz-sitx almost 4 years ago
Labels: enhancement

#20 - Add gitter link to readme and community pages

Issue - State: closed - Opened by salotz-sitx almost 4 years ago - 1 comment

#19 - Add a Gitter chat badge to README.org

Pull Request - State: closed - Opened by gitter-badger almost 4 years ago

#18 - Updated REVO resampler. Changes the way merge pairs are determined.

Pull Request - State: closed - Opened by dixonth1 almost 4 years ago - 6 comments

#17 - typo in RebindingBC superclass call

Issue - State: closed - Opened by salotz-sitx almost 4 years ago

#16 - Remove dependency on `image_distance` being an array

Issue - State: closed - Opened by salotz-sitx almost 4 years ago - 2 comments
Labels: enhancement, breaking

#15 - OpenMM runner bugfix & set_loglevel API

Pull Request - State: closed - Opened by salotz-sitx almost 4 years ago

#14 - Remove networkx DiGraph as core datastructure of MacroStateNetwork

Issue - State: open - Opened by salotz almost 4 years ago
Labels: enhancement, dependencies

#13 - For `MacroStateNetwork` don't calculate transition probabilities

Issue - State: open - Opened by salotz about 4 years ago
Labels: enhancement, breaking

#12 - For `MacroStateNetwork` make separate "weighted_counts" and "counts" attributes for edges

Issue - State: open - Opened by salotz about 4 years ago
Labels: enhancement

#11 - Add method to remove observables from HDF5

Issue - State: closed - Opened by salotz about 4 years ago

#10 - ContigTree and lineages functions without boundary condition discontinuities

Issue - State: closed - Opened by salotz about 4 years ago - 1 comment

#9 - Wepy h5 record_fields error in running `run_resampling_panel' function

Issue - State: closed - Opened by ndonyapour about 4 years ago - 2 comments

#8 - Bump cryptography from 2.9.2 to 3.2 in /.jubeo

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies, python

#7 - Fixed typos

Pull Request - State: closed - Opened by edeustua over 4 years ago

#6 - Removed check from _key_init method

Pull Request - State: closed - Opened by salotz over 4 years ago

#5 - Add "weighted transition counts" function

Issue - State: closed - Opened by salotz over 4 years ago - 1 comment

#4 - fixes compute observable save_to_hdf5