Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / 4dn-dcic/tibanna issues and pull requests

#399 - Update ec2_utils.py to handle SpotInstance limits

Pull Request - State: open - Opened by laurentiush 8 months ago

#397 - Large amounts of NAT gateway costs

Issue - State: closed - Opened by laurentiush 9 months ago - 4 comments

#396 - Upgrade Python 3.11

Pull Request - State: closed - Opened by dmichaels-harvard 10 months ago - 2 comments

#395 - Python 3.9/3.10

Pull Request - State: closed - Opened by willronchetti 10 months ago - 1 comment

#394 - Transfer ownership of Snakemake tibanna plugin

Issue - State: open - Opened by johanneskoester 10 months ago - 7 comments

#393 - Remove Unused Dependency: Requests

Pull Request - State: closed - Opened by gdrosos 11 months ago - 7 comments

#392 - Add `instance_start_time` to `tibanna stat`

Pull Request - State: closed - Opened by alexander-veit 11 months ago

#391 - Handle zero mem available correctly in plot_metrics

Pull Request - State: closed - Opened by alexander-veit about 1 year ago

#390 - Bump Benchmark

Pull Request - State: closed - Opened by alexander-veit about 1 year ago

#389 - runtask failure : InvalidFleetConfig

Issue - State: closed - Opened by nhartwic about 1 year ago - 6 comments

#388 - Improved fleet error handling + smaller fixes

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#387 - Accept kwargs

Pull Request - State: closed - Opened by drio18 over 1 year ago

#386 - Correct fleet management

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#385 - Delete fleet when instance could not be launched

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#384 - Remove Ubuntu 16.04 references

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#383 - Handle launch templates differently

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#382 - Tibanna instance type error with snakemake

Issue - State: open - Opened by Bioinf-usr over 1 year ago - 29 comments

#381 - botocore client error Rate Exceeded

Issue - State: open - Opened by nhartwic over 1 year ago - 1 comment

#380 - Add `arm_per_region` as option, fix Singularity, reduce build time

Pull Request - State: closed - Opened by alexander-veit over 1 year ago - 1 comment

#379 - CodeBuild Support

Pull Request - State: closed - Opened by willronchetti over 1 year ago

#378 - Bump certifi from 2022.9.24 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#377 - Fix CPU utilzation reporting

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#376 - Pin `requests` version

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#375 - Support Graviton instances and switch to EC2 fleets

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#374 - Fix ReadTheDocs build

Pull Request - State: closed - Opened by alexander-veit over 1 year ago

#373 - SFN Timeout

Pull Request - State: closed - Opened by willronchetti over 1 year ago

#372 - Self-contained metrics report

Pull Request - State: closed - Opened by alexander-veit almost 2 years ago

#371 - Simpler deploy of patch releases

Pull Request - State: open - Opened by alexander-veit almost 2 years ago

#370 - Randomize runs based on Instance Type, Subnet

Pull Request - State: closed - Opened by willronchetti almost 2 years ago

#369 - Use Cloudwatch agent to collect metrics

Pull Request - State: closed - Opened by alexander-veit almost 2 years ago

#368 - got it to work on my Mac with python 3.10

Pull Request - State: open - Opened by SooLee almost 2 years ago - 5 comments

#367 - plot_metrics isn't producing some plots

Issue - State: closed - Opened by nhartwic almost 2 years ago - 9 comments

#366 - Add a contribution policy (and small additions to .gitignore)

Pull Request - State: closed - Opened by netsettler about 2 years ago

#365 - AWS ending python 3.6 support for lambda functions

Issue - State: closed - Opened by nate-d-olson about 2 years ago - 1 comment

#364 - Docker image for 1.9.2 doesn't exist

Issue - State: closed - Opened by klai5 over 2 years ago - 1 comment

#363 - Move to Poetry and Python 3.8

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#362 - Tibanna/Snakemake compatibility issue?

Issue - State: closed - Opened by dvav over 2 years ago - 4 comments

#361 - Switch lambdas to Python 3.8 runtime

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#360 - Pass custom-net option to cwltool

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#359 - KMS Key Support

Pull Request - State: closed - Opened by willronchetti over 2 years ago

#358 - Step functions fail for snakemake rules

Issue - State: closed - Opened by nate-d-olson over 2 years ago - 1 comment

#357 - Make ami_id configurable

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#356 - Make ami_id an attribute of the API class

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#355 - AMI Update, Replication

Pull Request - State: closed - Opened by willronchetti over 2 years ago

#354 - Add run_args to specify additional command line arguments

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#353 - Update postrun.json when job fails

Pull Request - State: closed - Opened by alexander-veit over 2 years ago

#352 - Add support for Caper

Pull Request - State: closed - Opened by alexander-veit almost 3 years ago

#351 - Fix tests

Pull Request - State: closed - Opened by alexander-veit almost 3 years ago

#350 - Spot failure detection

Pull Request - State: closed - Opened by alexander-veit almost 3 years ago

#349 - Updated link to public DOI instead of routing through a Harvard proxy.

Pull Request - State: closed - Opened by delagoya almost 3 years ago - 1 comment

#348 - Update iam_utils.py

Pull Request - State: open - Opened by SooLee almost 3 years ago

#347 - Specifying ECR AWSF_IMAGE in snakemake

Issue - State: closed - Opened by klai5 almost 3 years ago - 1 comment

#346 - Ecr

Pull Request - State: closed - Opened by SooLee almost 3 years ago

#345 - adding local wf dir contents to log

Pull Request - State: closed - Opened by SooLee almost 3 years ago

#344 - Log Differences between 0.18.3 and 1.0+

Issue - State: closed - Opened by klai5 almost 3 years ago - 3 comments

#343 - Vpc

Pull Request - State: closed - Opened by SooLee about 3 years ago

#342 - MissingInputException with Snakemake and Tibanna

Issue - State: closed - Opened by xgaia about 3 years ago - 2 comments

#341 - Softkill

Pull Request - State: closed - Opened by SooLee about 3 years ago

#340 - Fix #300 by sorting output targets before uploading

Pull Request - State: open - Opened by nigiord about 3 years ago - 1 comment

#339 - cost lambda name from var

Pull Request - State: closed - Opened by SooLee about 3 years ago

#338 - return execArn for run_workflow

Pull Request - State: closed - Opened by SooLee about 3 years ago

#337 - Forked repo isn't used on EC2 instances even though it is declared at deployment

Issue - State: closed - Opened by nigiord about 3 years ago - 3 comments

#336 - Fix metrics report, when top commands contain double quotes

Pull Request - State: closed - Opened by alexander-veit about 3 years ago

#335 - Access block

Pull Request - State: closed - Opened by SooLee about 3 years ago

#334 - fixed md5 not getting reported

Pull Request - State: closed - Opened by SooLee about 3 years ago

#333 - Check output

Pull Request - State: closed - Opened by SooLee about 3 years ago

#332 - Add --force to the cost_estimate command

Pull Request - State: closed - Opened by alexander-veit about 3 years ago

#331 - GP3 throughput

Pull Request - State: closed - Opened by alexander-veit about 3 years ago

#330 - adding permission for cost updater for nonadmin user

Pull Request - State: closed - Opened by SooLee about 3 years ago

#329 - Fill default

Pull Request - State: closed - Opened by SooLee over 3 years ago

#328 - Tibanna1.0 errors out with Snakemake

Issue - State: closed - Opened by klai5 over 3 years ago - 1 comment

#327 - --use-spot and --do-not-use-spot option added to rerun

Pull Request - State: closed - Opened by SooLee over 3 years ago

#325 - Allow tagging of output files

Pull Request - State: closed - Opened by alexander-veit over 3 years ago

#324 - Tibanna ff wrapper

Pull Request - State: closed - Opened by SooLee over 3 years ago - 2 comments

#323 - Add cost estimate type

Pull Request - State: closed - Opened by alexander-veit over 3 years ago

#322 - Encrypt upload

Pull Request - State: closed - Opened by SooLee over 3 years ago

#321 - Refactoring, bugfixes

Pull Request - State: closed - Opened by alexander-veit over 3 years ago

#320 - S3 Upload Encryption Argument

Issue - State: closed - Opened by csoulette over 3 years ago - 11 comments

#319 - Automatic cost updater

Pull Request - State: closed - Opened by alexander-veit over 3 years ago

#318 - Job id dep

Pull Request - State: closed - Opened by SooLee over 3 years ago

#317 - various fixes

Pull Request - State: closed - Opened by SooLee over 3 years ago

#316 - Metric html title

Pull Request - State: closed - Opened by SooLee over 3 years ago

#315 - Add cost estimation

Pull Request - State: closed - Opened by alexander-veit over 3 years ago - 2 comments

#314 - goofys version update

Pull Request - State: closed - Opened by SooLee over 3 years ago

#313 - 1.0.1

Pull Request - State: closed - Opened by SooLee over 3 years ago

#312 - v1.0.0

Pull Request - State: closed - Opened by SooLee over 3 years ago

#311 - Add docs build

Pull Request - State: closed - Opened by willronchetti over 3 years ago

#310 - GA Build

Pull Request - State: closed - Opened by willronchetti over 3 years ago

#309 - Snakemake+Tibanna should upload log files

Issue - State: open - Opened by nhartwic over 3 years ago

#308 - Job Runs Forever with weird Cloudwatch Logs

Issue - State: closed - Opened by nhartwic over 3 years ago - 1 comment

#307 - Jobs sometimes fail to finish after completing execution

Issue - State: closed - Opened by nhartwic over 3 years ago - 1 comment

#304 - Feature Request - Add Cores used to tibanna stat output

Issue - State: open - Opened by nhartwic over 3 years ago - 7 comments

#303 - Pip alert when running deploy_unicorn

Issue - State: closed - Opened by rdavison over 3 years ago - 1 comment

#294 - Can ebs_size get increased via the snakemake command?

Issue - State: closed - Opened by klai5 almost 4 years ago - 1 comment

#260 - Error running tibanna commands

Issue - State: closed - Opened by nate-d-olson over 4 years ago - 4 comments

#256 - Trouble Running Snakemake via Tibanna

Issue - State: open - Opened by sengoku93 over 4 years ago - 53 comments

#252 - Region

Pull Request - State: closed - Opened by SooLee over 4 years ago - 1 comment

#240 - Test plots

Pull Request - State: closed - Opened by SooLee almost 5 years ago