4dn-dcic/pairix issues and pull requests

#80 - 0.3.9

Pull Request - State: open - Opened by clarabakker 10 days ago

#79 - Compile fails with gcc 14.2/clang 18.1

Issue - State: open - Opened by lrauschning about 2 months ago

#78 - Fix various incompatible pointer types.

Pull Request - State: closed - Opened by emollier 6 months ago - 1 comment

#77 - Isoc99

Pull Request - State: closed - Opened by SooLee about 1 year ago - 2 comments

#76 - Empty cool and mcool files

Issue - State: open - Opened by laracolombo about 1 year ago

#75 - Is there a tool to convert bam file to juicer's merged_nodups.txt file?

Issue - State: open - Opened by xiekunwhy over 1 year ago

#74 - Cannot install on Mac M2

Issue - State: open - Opened by evo-eco-gen over 1 year ago - 3 comments

#73 - [ti_index_core] the indexes overlap or are out of bounds

Issue - State: open - Opened by molecule53 almost 2 years ago - 7 comments

#72 - Problem with fragment_4dnpairs.pl

Issue - State: closed - Opened by zzh24zzh over 2 years ago

#71 - Avoid a Python 3.10 regression in iterating GzipFiles

Pull Request - State: open - Opened by stefanor about 3 years ago

#70 - Which coordinates does pairix return?

Issue - State: open - Opened by gdolsten over 3 years ago - 3 comments

#69 - pypairix to capture pairs that have specific readIDs

Issue - State: open - Opened by LIZW2019 over 3 years ago

#68 - Fix typo

Pull Request - State: closed - Opened by nathancfox over 3 years ago - 1 comment

#67 - Converting pairs to merged_nodups

Issue - State: closed - Opened by papelypluma almost 4 years ago - 2 comments

#66 - max chrom size too small

Issue - State: open - Opened by dmalzl about 4 years ago - 8 comments

#65 - free BGZF

Pull Request - State: open - Opened by lldelisle over 4 years ago

#64 - Support for python3.8

Issue - State: closed - Opened by lldelisle over 4 years ago - 4 comments

#63 - Strand fields in pairs file format

Issue - State: closed - Opened by oriolfornes almost 5 years ago - 1 comment

#62 - Dev 1

Pull Request - State: open - Opened by SooLee about 5 years ago

#61 - pypairix linecount no longer reverting to int

Pull Request - State: closed - Opened by SooLee almost 6 years ago - 1 comment

#60 - Is there a binary spec for the pairix format?

Issue - State: closed - Opened by cmdcolin about 6 years ago - 7 comments

#59 - Fetching small regions can be very slow

Issue - State: closed - Opened by mimakaev about 6 years ago - 4 comments

#58 - Integer overflow for -n option: reporting negative numbers!

Issue - State: closed - Opened by mimakaev about 6 years ago - 6 comments

#57 - 0.3.6

Pull Request - State: closed - Opened by SooLee almost 7 years ago

#56 - Two questions about the pairs format

Issue - State: closed - Opened by lh3 almost 7 years ago - 2 comments

#55 - 0.3.5

Pull Request - State: closed - Opened by SooLee almost 7 years ago

#54 - 29

Pull Request - State: closed - Opened by SooLee almost 7 years ago

#53 - Add a Codacy badge to README.md

Pull Request - State: closed - Opened by codacy-badger about 7 years ago

#52 - 0.3.3

Pull Request - State: closed - Opened by carlvitzthum about 7 years ago

#51 - executing get_blocknames() twices crashes Python

Issue - State: closed - Opened by golobor about 7 years ago - 3 comments

#50 - pypairix check triangle

Issue - State: closed - Opened by SooLee over 7 years ago

#49 - updated valgrind test for travis

Pull Request - State: closed - Opened by SooLee over 7 years ago

#48 - 0.3.1

Pull Request - State: closed - Opened by carlvitzthum over 7 years ago

#47 - 0.3.0

Pull Request - State: closed - Opened by SooLee over 7 years ago

#46 - 0.2.9

Pull Request - State: closed - Opened by SooLee over 7 years ago

#45 - fix extra spaces from some versions of wc

Pull Request - State: closed - Opened by burakalver over 7 years ago

#44 - Hotfix

Pull Request - State: closed - Opened by carlvitzthum over 7 years ago

#43 - autoflip, print-region-split-character, added run-merge-pairs

Pull Request - State: closed - Opened by SooLee over 7 years ago

#42 - V0.2.6

Pull Request - State: closed - Opened by SooLee over 7 years ago

#41 - assume symmetrical query

Issue - State: closed - Opened by blajoie over 7 years ago - 1 comment
Labels: enhancement

#40 - quick proofread of README.md

Pull Request - State: closed - Opened by scottkall over 7 years ago - 1 comment

#39 - Error indexing a custom contact text file

Issue - State: closed - Opened by RXCoux over 7 years ago - 2 comments

#38 - 0.2.5

Pull Request - State: closed - Opened by SooLee over 7 years ago

#37 - V0.2.4

Pull Request - State: closed - Opened by SooLee over 7 years ago

#36 - haha

Pull Request - State: closed - Opened by SooLee over 7 years ago

#35 - V0.2.3

Pull Request - State: closed - Opened by SooLee over 7 years ago

#34 - V0.2.2

Pull Request - State: closed - Opened by SooLee over 7 years ago

#33 - V0.2.1

Pull Request - State: closed - Opened by SooLee over 7 years ago

#32 - V0.2.0

Pull Request - State: closed - Opened by SooLee over 7 years ago

#31 - V0.1.9

Pull Request - State: closed - Opened by SooLee over 7 years ago

#30 - V0.1.8

Pull Request - State: closed - Opened by SooLee over 7 years ago

#29 - V0.1.7

Pull Request - State: closed - Opened by SooLee over 7 years ago

#28 - V0.1.6

Pull Request - State: closed - Opened by SooLee over 7 years ago

#27 - V0.1.5

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#26 - Reformat build_index docstring

Pull Request - State: closed - Opened by nvictus almost 8 years ago

#25 - V0.1.4

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#24 - Version 0.1.3

Pull Request - State: closed - Opened by carlvitzthum almost 8 years ago

#23 - Dev

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#22 - Dev9

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#21 - added util/old_merged_nodup2pairs.pl

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#20 - added merged_nodup2pairs.pl

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#19 - added merged_nodup2pairs.pl

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#18 - Ff 566

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#17 - 1D query for 2D indexed files, for both pairix and pypairix

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#16 - Warning

Pull Request - State: closed - Opened by SooLee almost 8 years ago - 1 comment

#15 - Pypairix 0.0.9

Pull Request - State: closed - Opened by carlvitzthum almost 8 years ago

#14 - Added 0.0.8 info to setup.py

Pull Request - State: closed - Opened by carlvitzthum almost 8 years ago

#13 - Tests 0.0.7

Pull Request - State: closed - Opened by carlvitzthum almost 8 years ago

#12 - Dev7

Pull Request - State: closed - Opened by carlvitzthum almost 8 years ago

#11 - Dev6

Pull Request - State: closed - Opened by SooLee almost 8 years ago

#10 - Merge pull request #9 from 4dn-dcic/master

Pull Request - State: closed - Opened by SooLee about 8 years ago

#9 - updated index structure

Pull Request - State: closed - Opened by SooLee about 8 years ago

#8 - Py2

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#7 - Dev4

Pull Request - State: closed - Opened by SooLee about 8 years ago

#6 - FF-431

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#5 - Header fix

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#4 - Pypi fix

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#3 - Pypi

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#2 - Python C extensions with python setup and testing

Pull Request - State: closed - Opened by carlvitzthum about 8 years ago

#1 - Update README.md

Pull Request - State: closed - Opened by burakalver over 8 years ago

GitHub / 4dn-dcic/pairix issues and pull requests