4dn-dcic/Submit4DN issues and pull requests

#178 - Ajs fix ecred bug

Pull Request - State: closed - Opened by aschroed about 2 months ago - 2 comments

#177 - Support for Python 3.12

Pull Request - State: open - Opened by dmichaels-harvard 3 months ago - 1 comment

#176 - validation error report update

Pull Request - State: closed - Opened by aschroed 4 months ago - 2 comments

#175 - Fix of bug I introduced that skipped validation error reporting

Pull Request - State: closed - Opened by aschroed 6 months ago - 1 comment

#174 - removed pdb that was blocking file upload

Pull Request - State: closed - Opened by aschroed 10 months ago - 1 comment

#173 - updated python versions in readme and add ga publish to the makefile

Pull Request - State: closed - Opened by aschroed 12 months ago - 1 comment

#172 - fix bug in get_upld_creds

Pull Request - State: closed - Opened by aschroed about 1 year ago - 1 comment

#171 - DRAFT - update to support python3.11

Pull Request - State: open - Opened by aschroed about 1 year ago - 1 comment

#170 - allow extra_file upload.

Pull Request - State: closed - Opened by aschroed about 1 year ago - 2 comments

#169 - Ajs fix dryrun error report

Pull Request - State: closed - Opened by aschroed about 1 year ago - 1 comment

#168 - Update poetry and other meta-tools (C4-1009)

Pull Request - State: closed - Opened by netsettler over 1 year ago - 2 comments

#167 - poetry update for dependabot alert resolution

Pull Request - State: closed - Opened by aschroed over 1 year ago - 1 comment

#166 - Bump gitpython from 3.1.27 to 3.1.30

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#165 - updated ubuntu version for github wfs

Pull Request - State: closed - Opened by aschroed over 1 year ago - 2 comments

#164 - Bump certifi from 2022.6.15 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 3 comments
Labels: dependencies

#163 - Add gsheet

Pull Request - State: open - Opened by aschroed almost 2 years ago - 1 comment

#162 - Tolerate cells with None value

Pull Request - State: closed - Opened by andreacosolo almost 2 years ago - 1 comment

#161 - Update install instructions for Windows + bug fix + expand home path

Pull Request - State: closed - Opened by andreacosolo about 2 years ago - 2 comments

#160 - Windows path handling

Pull Request - State: closed - Opened by aschroed about 2 years ago - 2 comments

#159 - Remove python3.6

Pull Request - State: closed - Opened by aschroed about 2 years ago - 1 comment

#158 - Use openpyxl

Pull Request - State: closed - Opened by aschroed over 2 years ago - 3 comments

#157 - add back required awscli dependency

Pull Request - State: closed - Opened by aschroed over 2 years ago - 1 comment

#156 - Updates to use the pathlib library instead of os.path

Pull Request - State: closed - Opened by aschroed over 2 years ago - 1 comment

#155 - More clean up and dependency updates

Pull Request - State: closed - Opened by aschroed over 2 years ago - 2 comments

#154 - Bump py from 1.4.31 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#153 - updated python version to >=3.6.1

Pull Request - State: closed - Opened by aschroed over 3 years ago - 1 comment

#152 - fix yml syntax

Pull Request - State: closed - Opened by aschroed over 3 years ago - 1 comment

#151 - added python-setup and python3.6 to publish.yml

Pull Request - State: closed - Opened by aschroed over 3 years ago - 1 comment

#150 - tweaked order of GenomicRegion in sheet order

Pull Request - State: closed - Opened by aschroed over 3 years ago

#149 - updated the publish action to explicily use poetry publish

Pull Request - State: closed - Opened by aschroed over 3 years ago

#148 - GA Build

Pull Request - State: closed - Opened by willronchetti almost 4 years ago - 1 comment

#147 - Remove python 2 support

Pull Request - State: closed - Opened by sbreiff about 4 years ago - 2 comments

#146 - added awscli to dependencies

Pull Request - State: closed - Opened by sbreiff about 4 years ago - 1 comment

#145 - Add makefile

Pull Request - State: closed - Opened by aschroed about 4 years ago - 2 comments

#144 - Update pyproject.toml

Pull Request - State: closed - Opened by andreacosolo about 4 years ago - 1 comment

#143 - Second round

Pull Request - State: closed - Opened by andreacosolo over 4 years ago - 1 comment

#142 - Mocker fixes

Pull Request - State: closed - Opened by sbreiff over 4 years ago - 1 comment

#141 - Entry Points

Pull Request - State: closed - Opened by willronchetti over 4 years ago - 1 comment

#140 - Changed the sheet_order in get_field_info

Pull Request - State: closed - Opened by andreacosolo over 4 years ago - 1 comment

#139 - Poetry

Pull Request - State: closed - Opened by willronchetti over 4 years ago - 1 comment

#138 - Test pillow upd

Pull Request - State: closed - Opened by aschroed over 4 years ago

#137 - Bump pillow from 3.3.0 to 6.2.0

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#136 - Validation output oddness

Issue - State: open - Opened by aschroed over 5 years ago - 1 comment

#135 - changed error_report function to expect error['name'] string rather t…

Pull Request - State: closed - Opened by aschroed over 5 years ago - 1 comment

#134 - Skip md5 calculation if file status is uploaded

Issue - State: closed - Opened by KorayKirli over 5 years ago - 1 comment

#133 - Fix to prevent expansion of attachment object when building field lists

Pull Request - State: closed - Opened by aschroed over 5 years ago - 2 comments

#132 - Paired_with check works with multiple aliases

Pull Request - State: closed - Opened by KorayKirli over 5 years ago - 1 comment

#131 - multiple aliases break the dry-run check for missing items

Issue - State: closed - Opened by KorayKirli over 5 years ago

#130 - Added Gene and BioFeature to sheet_order and removed references to Ta…

Pull Request - State: closed - Opened by aschroed over 5 years ago - 3 comments

#129 - Experiment type

Pull Request - State: closed - Opened by sbreiff over 5 years ago - 2 comments

#128 - Tweak remote 2

Pull Request - State: closed - Opened by aschroed over 5 years ago - 1 comment

#127 - Tweak remote prompt

Pull Request - State: closed - Opened by aschroed over 5 years ago - 1 comment

#126 - fixed a bug with dealing with ExperimentSet field in import_data

Pull Request - State: closed - Opened by aschroed over 5 years ago - 1 comment

#125 - added a type to mimetypes for gb flat file as text/plain

Pull Request - State: closed - Opened by aschroed over 5 years ago - 2 comments

#124 - Fix missing tildes

Pull Request - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#123 - sheet order ontologyterm up, publication down.

Pull Request - State: closed - Opened by burakalver almost 6 years ago - 1 comment

#122 - change_requests_dep

Pull Request - State: closed - Opened by KorayKirli almost 6 years ago - 1 comment

#121 - Fffe fix

Pull Request - State: closed - Opened by sbreiff almost 6 years ago - 2 comments

#120 - Try again

Pull Request - State: closed - Opened by sbreiff about 6 years ago - 1 comment

#119 - Novalid fix

Pull Request - State: closed - Opened by aschroed about 6 years ago - 1 comment

#118 - add file format enums

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#117 - add missing relations

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#116 - DON'T MERGE UNTIL FOURFRONT file_format_part_2 is Merged - Ext file fix

Pull Request - State: closed - Opened by aschroed about 6 years ago - 1 comment

#115 - get_field_info workbook presets

Pull Request - State: closed - Opened by sbreiff about 6 years ago - 1 comment

#114 - Novalid fix

Pull Request - State: closed - Opened by aschroed about 6 years ago - 1 comment

#113 - Report access denied

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#112 - replace request with get_metadata

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#111 - Edited get_upload_creds to use ff_utils.post_metadata

Pull Request - State: closed - Opened by sbreiff about 6 years ago - 1 comment

#110 - Attach

Pull Request - State: closed - Opened by aschroed about 6 years ago - 1 comment

#109 - Ext files2

Pull Request - State: closed - Opened by aschroed about 6 years ago - 1 comment

#108 - goodbye fdnDCIC

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#107 - Excel empty row formatting

Pull Request - State: closed - Opened by KorayKirli about 6 years ago - 1 comment

#106 - Alias list2patchxl

Pull Request - State: closed - Opened by aschroed about 6 years ago - 2 comments

#105 - Dcicutils upgrade

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#104 - Add produced_from to list of fields ignored by validator

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#103 - User pf2

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#102 - Don't merge yet - User pf

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#101 - Treatments

Pull Request - State: closed - Opened by sbreiff over 6 years ago - 1 comment

#100 - Fix so that a subembedded object field that is an array can be loaded…

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#99 - Changed one line in import_data.excel_reader to prevent an error

Pull Request - State: closed - Opened by sbreiff over 6 years ago - 2 comments

#98 - Changes in reporting of upload md5 error

Pull Request - State: closed - Opened by sbreiff over 6 years ago - 2 comments

#97 - update upload_creds key names

Pull Request - State: closed - Opened by j1z0 over 6 years ago - 2 comments

#96 - check attribute for award for FdnConnection

Pull Request - State: closed - Opened by SooLee over 6 years ago - 1 comment

#95 - Removed FileFasta from sheet order

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#94 - skip path dry run

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#93 - order

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#92 - File pair validator

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#91 - Ontology term

Pull Request - State: closed - Opened by sbreiff over 6 years ago

#90 - Dcicutils

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#89 - url addon for post/patch

Pull Request - State: closed - Opened by SooLee over 6 years ago - 1 comment

#88 - Validator

Pull Request - State: closed - Opened by aschroed over 6 years ago - 1 comment

#87 - altered sheet_order in fdnDCIC.py

Pull Request - State: closed - Opened by sbreiff over 6 years ago - 1 comment

#86 - Lookup sort

Pull Request - State: closed - Opened by sbreiff over 6 years ago - 1 comment

#85 - use mic_path sheet as mic

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 2 comments

#84 - testing

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#83 - Add user workflows

Pull Request - State: closed - Opened by KorayKirli over 6 years ago - 1 comment

#82 - Add antibody to order

Pull Request - State: closed - Opened by aschroed over 6 years ago

#81 - FF 1017 Del patch

Pull Request - State: closed - Opened by KorayKirli almost 7 years ago - 4 comments

#80 - Fix embedded patch

Pull Request - State: closed - Opened by aschroed almost 7 years ago - 1 comment

#79 - add new sheets to order list

Pull Request - State: closed - Opened by KorayKirli almost 7 years ago - 2 comments

GitHub / 4dn-dcic/Submit4DN issues and pull requests