Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / 4DNucleome/PartSeg issues and pull requests
#1028 - build(deps): bump urllib3 from 2.0.6 to 2.0.7 in /requirements
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
- 2 comments
Labels: dependencies, python
#1027 - test: [Automatic] Constraints upgrades: `h5py`, `imageio`, `ipython`, `numpy`, `packaging`, `pydantic`, `pyinstaller`, `pyqt5`, `scipy`, `sentry-sdk`, `superqt`, `tifffile`, `xlsxwriter`
Pull Request -
State: closed - Opened by Czaki 12 months ago
- 2 comments
#1026 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 2 comments
#1025 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug
#1024 - docs: Improve information about export to zenodo
Pull Request -
State: open - Opened by Czaki about 1 year ago
- 3 comments
#1023 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug
#1022 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 2 comments
#1021 - ci: Remove plugin page preview as it is no longer maintained
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 1 comment
#1020 - test: [Automatic] Constraints upgrades: `imagecodecs`, `imageio`, `ipykernel`, `ipython`, `numpy`, `oiffile`, `pandas`, `psygnal`, `pyinstaller`, `qtconsole`, `qtpy`, `sentry-sdk`, `simpleitk`, `superqt`, `tifffile`, `xlsxwriter`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 6 comments
#1019 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 2 comments
#1018 - test: [Automatic] Constraints upgrades: `imageio`, `pyinstaller`, `tifffile`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 2 comments
#1017 - [test-bot] napari repos test fail
Issue -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug
#1016 - fix: When run batch check if file extension is supported by loader
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1015 - fix: Do not allow to select and render corrupted batch plans
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1014 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug
#1013 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 3 comments
#1012 - build(deps): bump tornado from 6.3.2 to 6.3.3 in /requirements
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 4 comments
Labels: dependencies, python
#1011 - test: [Automatic] Constraints upgrades: `imagecodecs`, `ipykernel`, `magicgui`, `psygnal`, `scipy`, `superqt`, `tifffile`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1010 - ci: use faster version of black
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 2 comments
#1009 - fix: Fix range threshold selection of algorithms
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1008 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 2 comments
#1007 - test: [Automatic] Constraints upgrades: `numpy`, `pygments`, `sentry-sdk`, `superqt`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1006 - ci: Change markdown linter from pre-commit to mdformat
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1005 - ci: Add qodana configuration
Pull Request -
State: open - Opened by Czaki about 1 year ago
- 3 comments
#1004 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 3 comments
#1003 - test: [Automatic] Constraints upgrades: only non direct updates
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 2 comments
#1002 - test: [Automatic] Constraints upgrades: `ipykernel`, `pydantic`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#1001 - feat: allow to save multiple napari layers to single file (Sourcery refactored)
Pull Request -
State: closed - Opened by sourcery-ai[bot] about 1 year ago
- 1 comment
#1000 - feat: allow to save multiple napari image layers to single tiff file
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#999 - ci: Add `...` to exclude in coverage
Pull Request -
State: open - Opened by Czaki about 1 year ago
- 2 comments
#998 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 3 comments
#997 - test: [Automatic] Constraints upgrades: `imagecodecs`, `sentry-sdk`, `tifffile`
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#996 - feat: Add option to export batch project with data
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#995 - fix: Fix bug that lead to corupted state when saving calculation plan to excel file
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#994 - Longer workflows cannot be restored from excel files
Issue -
State: closed - Opened by Czaki about 1 year ago
- 1 comment
#993 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug
#992 - fix: Fix bug in read tiff files with double `Q` in axes but one related to dummy dimmension
Pull Request -
State: closed - Opened by Czaki about 1 year ago
- 3 comments
#991 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 year ago
- 2 comments
#990 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#989 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#988 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 3 comments
#987 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#986 - test: [Automatic] Constraints upgrades: `h5py`, `imagecodecs`, `imageio`, `ipykernel`, `napari`, `numpy`, `pandas`, `pydantic`, `pyinstaller`, `scipy`, `sentry-sdk`, `tifffile`, `vispy`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#985 - fix: Fix napari repo workflow
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#984 - [test-bot] napari repos test fail
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#983 - fix: importing plugins in bundle keeping proper module names
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#982 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#981 - fix: Lower npe2 schema version to work with older napari releases
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#980 - fix: Ensure that the module `PartSegCore.channel_class` is present in bundle
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#979 - fix: Bump os version for main tests workflow.
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 1 comment
#978 - fix: Generate test report per platfom
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#977 - fix: Bump OS versions for part of testing workflows.
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#976 - [test-bot] napari repos test fail
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#975 - test: [Automatic] Constraints upgrades: `imageio`, `ipython`, `psygnal`, `scipy`, `sentry-sdk`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#974 - fix: Fix possible problem of double registration napari plugin in PartSeg bundle
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#973 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#972 - fix: Fix bug in the wrong order of axis saved in napari contribution
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#971 - docs: Create release notes for PartSeg 0.15.0
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#970 - test: [Automatic] Constraints upgrades: `imageio`, `pandas`, `pydantic`, `pyopengl-accelerate`, `sentry-sdk`, `xlsxwriter`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#969 - fix: Proper calculate bounds for watershed methods
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#968 - feat: add napari widget to copy lables along z-axis
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#967 - refactor: Remove `pkg_resources` usage as it is deprecated
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#966 - refactor: Convert napari plugin to npe2
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#965 - fix: Proper handle error when faile to parse version from dir name
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#964 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#963 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#962 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#961 - test: [Automatic] Constraints upgrades: `requests`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#960 - build(deps): bump requests from 2.30.0 to 2.31.0 in /requirements
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 3 comments
Labels: dependencies, python
#959 - test: [Automatic] Constraints upgrades: `sentry-sdk`, `xlsxwriter`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#958 - feat: Add napari widgets for all group of algoritms
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#957 - test: [Automatic] Constraints upgrades: `ipykernel`, `local-migrator`, `pyinstaller`, `sentry-sdk`, `sympy`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#956 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 4 comments
#955 - test: [Automatic] Constraints upgrades: `ipython`, `nme`, `qtconsole`, `requests`, `sentry-sdk`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#954 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#953 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#952 - test: [Automatic] Constraints upgrades: `local-migrator`, `nme`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 1 comment
#951 - chore: Migrate from `nme` to `local_migrator`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#950 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#949 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#948 - test: [Automatic] Constraints upgrades: `imageio`, `ipython`, `pandas`, `requests`, `sentry-sdk`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#947 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#946 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#945 - ci: [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments
#944 - fix: Add padding zeros for component num when load Mask seg file to ROI GUI
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#943 - feat: Do not abort processing whole mask segmentation project during exception on single component
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#942 - feat: Add forget all button to multiple files widget
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
Labels: enhancement
#941 - fix: Resolve warnings when testing custom save dialog.
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#940 - [test-bot] pyinstaller bundle --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#939 - [test-bot] pip install --pre is failing
Issue -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug
#938 - fix: Use text icon, not pixmap icon in colormap and labels list
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#937 - test: [Automatic] Constraints upgrades: `fonticon-fontawesome6`, `imageio`, `numpy`, `partsegcore-compiled-backend`, `pygments`, `sentry-sdk`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#936 - feat: Add import and export operation for labels and colormaps
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#935 - feat: Implement napari widgets for colormap and lables control
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 5 comments
#934 - ci: Update codecov configuration to wait on two reports before post information
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#933 - chore: Add check for PR title
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#932 - test: [Automatic] Dependency upgrades: `packaging`, `pyinstaller`, `pyopengl-accelerate`, `tifffile`, `xlsxwriter`
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 2 comments
#931 - Protect from saving when mask or segmentation is absent
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#930 - Add constrains file for tests
Pull Request -
State: closed - Opened by Czaki over 1 year ago
- 3 comments
#929 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] over 1 year ago
- 2 comments