Ecosyste.ms: Issues

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GitHub / 4DNucleome/PartSeg issues and pull requests

#1028 - build(deps): bump urllib3 from 2.0.6 to 2.0.7 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 2 comments
Labels: dependencies, python

#1026 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#1025 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#1024 - docs: Improve information about export to zenodo

Pull Request - State: open - Opened by Czaki about 1 year ago - 3 comments

#1023 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#1022 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#1021 - ci: Remove plugin page preview as it is no longer maintained

Pull Request - State: closed - Opened by Czaki about 1 year ago - 1 comment

#1019 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#1018 - test: [Automatic] Constraints upgrades: `imageio`, `pyinstaller`, `tifffile`

Pull Request - State: closed - Opened by Czaki about 1 year ago - 2 comments

#1017 - [test-bot] napari repos test fail

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#1016 - fix: When run batch check if file extension is supported by loader

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1015 - fix: Do not allow to select and render corrupted batch plans

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1014 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#1013 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 3 comments

#1012 - build(deps): bump tornado from 6.3.2 to 6.3.3 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 4 comments
Labels: dependencies, python

#1010 - ci: use faster version of black

Pull Request - State: closed - Opened by Czaki about 1 year ago - 2 comments

#1009 - fix: Fix range threshold selection of algorithms

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1008 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#1007 - test: [Automatic] Constraints upgrades: `numpy`, `pygments`, `sentry-sdk`, `superqt`

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1006 - ci: Change markdown linter from pre-commit to mdformat

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1005 - ci: Add qodana configuration

Pull Request - State: open - Opened by Czaki about 1 year ago - 3 comments

#1004 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 3 comments

#1003 - test: [Automatic] Constraints upgrades: only non direct updates

Pull Request - State: closed - Opened by Czaki about 1 year ago - 2 comments

#1002 - test: [Automatic] Constraints upgrades: `ipykernel`, `pydantic`

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#1001 - feat: allow to save multiple napari layers to single file (Sourcery refactored)

Pull Request - State: closed - Opened by sourcery-ai[bot] about 1 year ago - 1 comment

#1000 - feat: allow to save multiple napari image layers to single tiff file

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#999 - ci: Add `...` to exclude in coverage

Pull Request - State: open - Opened by Czaki about 1 year ago - 2 comments

#998 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 3 comments

#997 - test: [Automatic] Constraints upgrades: `imagecodecs`, `sentry-sdk`, `tifffile`

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#996 - feat: Add option to export batch project with data

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#995 - fix: Fix bug that lead to corupted state when saving calculation plan to excel file

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#994 - Longer workflows cannot be restored from excel files

Issue - State: closed - Opened by Czaki about 1 year ago - 1 comment

#993 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] about 1 year ago
Labels: bug

#992 - fix: Fix bug in read tiff files with double `Q` in axes but one related to dummy dimmension

Pull Request - State: closed - Opened by Czaki about 1 year ago - 3 comments

#991 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#990 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#989 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#988 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 3 comments

#987 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#985 - fix: Fix napari repo workflow

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#984 - [test-bot] napari repos test fail

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#983 - fix: importing plugins in bundle keeping proper module names

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#982 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#981 - fix: Lower npe2 schema version to work with older napari releases

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#980 - fix: Ensure that the module `PartSegCore.channel_class` is present in bundle

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#979 - fix: Bump os version for main tests workflow.

Pull Request - State: closed - Opened by Czaki over 1 year ago - 1 comment

#978 - fix: Generate test report per platfom

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#977 - fix: Bump OS versions for part of testing workflows.

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#976 - [test-bot] napari repos test fail

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#974 - fix: Fix possible problem of double registration napari plugin in PartSeg bundle

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#973 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#972 - fix: Fix bug in the wrong order of axis saved in napari contribution

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#971 - docs: Create release notes for PartSeg 0.15.0

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#969 - fix: Proper calculate bounds for watershed methods

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#968 - feat: add napari widget to copy lables along z-axis

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#967 - refactor: Remove `pkg_resources` usage as it is deprecated

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#966 - refactor: Convert napari plugin to npe2

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#965 - fix: Proper handle error when faile to parse version from dir name

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#964 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#963 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#962 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#961 - test: [Automatic] Constraints upgrades: `requests`

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#960 - build(deps): bump requests from 2.30.0 to 2.31.0 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies, python

#959 - test: [Automatic] Constraints upgrades: `sentry-sdk`, `xlsxwriter`

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#958 - feat: Add napari widgets for all group of algoritms

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#956 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 4 comments

#954 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#953 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#952 - test: [Automatic] Constraints upgrades: `local-migrator`, `nme`

Pull Request - State: closed - Opened by Czaki over 1 year ago - 1 comment

#951 - chore: Migrate from `nme` to `local_migrator`

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#950 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#949 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#947 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#946 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#945 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#944 - fix: Add padding zeros for component num when load Mask seg file to ROI GUI

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#942 - feat: Add forget all button to multiple files widget

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments
Labels: enhancement

#941 - fix: Resolve warnings when testing custom save dialog.

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#940 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#939 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: bug

#938 - fix: Use text icon, not pixmap icon in colormap and labels list

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#936 - feat: Add import and export operation for labels and colormaps

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#935 - feat: Implement napari widgets for colormap and lables control

Pull Request - State: closed - Opened by Czaki over 1 year ago - 5 comments

#934 - ci: Update codecov configuration to wait on two reports before post information

Pull Request - State: closed - Opened by Czaki over 1 year ago - 2 comments

#933 - chore: Add check for PR title

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#931 - Protect from saving when mask or segmentation is absent

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#930 - Add constrains file for tests

Pull Request - State: closed - Opened by Czaki over 1 year ago - 3 comments

#929 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments