4DNucleome/PartSeg issues and pull requests

#1121 - build: Enable macOS-arm bundle builds

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1120 - build: Do not create archive twice when create bundle

Pull Request - State: closed - Opened by Czaki 5 months ago - 3 comments

#1119 - ci: add actionlint to CI to early prevent bug in github workflows

Pull Request - State: closed - Opened by Czaki 5 months ago - 3 comments

#1118 - ci: remove pyqt5 from constraints

Pull Request - State: closed - Opened by Czaki 5 months ago - 6 comments

#1117 - ci: Add workflow for releases from GHA

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1116 - fix: Fix napari 0.5.0 compatybility

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1115 - build: Update readme and release to point to GitHub releases

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1114 - build: Fix not bundling `Font Awesome 6 Free-Solid-900.otf` file to executable

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1113 - ci: Bump macos runners to macos-13 (both azure and GHA)

Pull Request - State: closed - Opened by Czaki 5 months ago - 3 comments

#1112 - test: [Automatic] Constraints upgrades: `pydantic`

Pull Request - State: closed - Opened by Czaki 5 months ago - 4 comments

#1111 - build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 4 comments
Labels: dependencies, python

#1111 - build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /requirements

Pull Request - State: open - Opened by dependabot[bot] 5 months ago - 3 comments
Labels: dependencies, python

#1110 - build(deps): bump tornado from 6.4 to 6.4.1 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 4 comments
Labels: dependencies, python

#1109 - build(deps): bump requests from 2.31.0 to 2.32.0 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 4 comments
Labels: dependencies, python

#1109 - build(deps): bump requests from 2.31.0 to 2.32.0 in /requirements

Pull Request - State: open - Opened by dependabot[bot] 6 months ago - 3 comments
Labels: dependencies, python

#1108 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 3 comments

#1107 - test: [Automatic] Constraints upgrades: `imagecodecs`, `magicgui`, `oiffile`, `openpyxl`, `packaging`, `pydantic`, `pyinstaller`, `requests`, `scipy`, `sentry-sdk`, `superqt`, `sympy`, `tifffile`, `vispy`

Pull Request - State: closed - Opened by Czaki 6 months ago - 3 comments

#1106 - build(deps): bump jinja2 from 3.1.3 to 3.1.4 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 3 comments
Labels: dependencies, python

#1105 - test: [Automatic] Constraints upgrades: `psygnal`, `pygments`, `qtconsole`, `sentry-sdk`, `superqt`, `tifffile`

Pull Request - State: closed - Opened by Czaki 7 months ago - 2 comments

#1104 - build(deps): bump tqdm from 4.66.2 to 4.66.3 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 3 comments
Labels: dependencies, python

#1103 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 2 comments

#1102 - test: [Automatic] Constraints upgrades: `pydantic`, `sentry-sdk`, `superqt`, `tifffile`

Pull Request - State: closed - Opened by Czaki 7 months ago - 3 comments

#1101 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 2 comments

#1100 - test: [Automatic] Constraints upgrades: `imageio`, `tifffile`

Pull Request - State: closed - Opened by Czaki 7 months ago - 2 comments

#1100 - test: [Automatic] Constraints upgrades: `imageio`, `tifffile`

Pull Request - State: closed - Opened by Czaki 7 months ago - 2 comments

#1099 - ci: Exclude pyside2 on python 3.11 and 3.12 from testing

Pull Request - State: closed - Opened by Czaki 7 months ago - 2 comments

#1098 - fix: fix test for validation length of message for sentry-sdk 2.0 release

Pull Request - State: closed - Opened by Czaki 7 months ago - 3 comments

#1097 - fix: When fix reader check lowercase extension for validate compatybility

Pull Request - State: closed - Opened by Czaki 7 months ago - 2 comments

#1096 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 2 comments

#1096 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 7 months ago - 3 comments

#1095 - build(deps): bump idna from 3.6 to 3.7 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 3 comments
Labels: dependencies, python

#1094 - build(deps): bump pillow from 10.2.0 to 10.3.0 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 3 comments
Labels: dependencies, python

#1093 - chore: Fix jupyter failing test by using constraints

Pull Request - State: closed - Opened by Czaki 8 months ago - 3 comments

#1092 - test: [Automatic] Constraints upgrades: `h5py`, `ipykernel`, `mahotas`, `pandas`, `psygnal`, `pydantic`, `pyinstaller`, `qtawesome`, `scipy`, `sentry-sdk`, `superqt`

Pull Request - State: closed - Opened by Czaki 8 months ago - 3 comments

#1091 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 2 comments

#1090 - test: [Automatic] Constraints upgrades: `psygnal`, `pydantic`, `sentry-sdk`, `vispy`

Pull Request - State: closed - Opened by Czaki 8 months ago - 3 comments

#1090 - test: [Automatic] Constraints upgrades: `psygnal`, `pydantic`, `sentry-sdk`, `vispy`

Pull Request - State: closed - Opened by Czaki 8 months ago - 3 comments

#1089 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 2 comments

#1088 - [test-bot] napari repos test fail

Issue - State: closed - Opened by github-actions[bot] 9 months ago
Labels: bug

#1087 - ci: Add python 3.12 testing

Pull Request - State: closed - Opened by Czaki 9 months ago - 4 comments

#1086 - test: [Automatic] Constraints upgrades: `magicgui`, `packaging`, `psygnal`, `pyinstaller`, `sentry-sdk`, `superqt`

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1085 - ci: block using `mpmath==1.4.0a0` and `sentry-sdk` 2.0.0a1/a2 in pre-test

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1084 - feat: pydantic 2 compatybility

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1083 - ci: Fix upgrade depenecies workflow

Pull Request - State: closed - Opened by Czaki 9 months ago - 2 comments

#1082 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] 9 months ago
Labels: bug

#1081 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 3 comments

#1081 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 3 comments

#1080 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 2 comments

#1079 - chore: Add new ruff rules and apply them

Pull Request - State: closed - Opened by Czaki 9 months ago - 4 comments

#1078 - ci: Add codespell to pre-commit and fix pointed bugs

Pull Request - State: closed - Opened by Czaki 9 months ago - 4 comments

#1077 - test: Improve test suite for `PartSegCore`

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1076 - ci: Switch from setup.cfg to pyproject.toml in workflows

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1075 - ci: Fix compiling pyinstaller pre-deps

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1074 - ci: Re add tests to coverage report

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1074 - ci: Re add tests to coverage report

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1073 - ci: remove requirement of 2 builds upload to codecov.io

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1072 - test: Improve test of PartSegImage

Pull Request - State: closed - Opened by Czaki 9 months ago - 3 comments

#1071 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: closed - Opened by github-actions[bot] 9 months ago
Labels: bug

#1070 - refactor: Migrate from setup.cfg to `pyproject.toml`

Pull Request - State: closed - Opened by Czaki 9 months ago - 2 comments

#1069 - [test-bot] pip install --pre is failing

Issue - State: closed - Opened by github-actions[bot] 9 months ago
Labels: bug

#1068 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 3 comments

#1067 - build(deps): bump peter-evans/create-pull-request from 5 to 6

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies

#1066 - build(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 7 comments
Labels: dependencies

#1065 - ci: Group actions update

Pull Request - State: closed - Opened by Czaki 10 months ago - 2 comments

#1064 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 2 comments

#1063 - test: [Automatic] Constraints upgrades: `imageio`, `ipykernel`, `local-migrator`, `napari`, `numpy`, `pandas`, `partsegcore-compiled-backend`, `pyinstaller`, `sentry-sdk`, `tifffile`, `vispy`, `xlsxwriter`

Pull Request - State: closed - Opened by Czaki 10 months ago - 3 comments

#1062 - ci: Update `actions/upload-artifact` and `actions/download-artifact` from 3 to 4

Pull Request - State: closed - Opened by Czaki 10 months ago - 2 comments

#1061 - build(deps): bump pillow from 10.1.0 to 10.2.0 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 3 comments
Labels: dependencies, python

#1060 - build(deps): bump jinja2 from 3.1.2 to 3.1.3 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 3 comments
Labels: dependencies, python

#1059 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 2 comments

#1058 - test: [Automatic] Constraints upgrades: `ipykernel`, `numpy`, `pandas`, `partsegcore-compiled-backend`, `pydantic`, `scipy`, `sentry-sdk`

Pull Request - State: closed - Opened by Czaki 10 months ago - 2 comments

#1057 - docs: Allow to use newer release of build docs dependencies

Pull Request - State: closed - Opened by Czaki 11 months ago - 2 comments

#1056 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 2 comments

#1055 - ci: Move coverage back to main workflow

Pull Request - State: closed - Opened by Czaki 11 months ago - 2 comments

#1054 - ci: Generate local report in `Tests` workflow and use proper script for fetch report

Pull Request - State: closed - Opened by Czaki 11 months ago - 2 comments

#1053 - ci: Run coverage upload in separate steep

Pull Request - State: closed - Opened by Czaki 11 months ago - 2 comments

#1052 - build(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 4 comments
Labels: dependencies, github_actions

#1051 - build(deps): bump github/codeql-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 3 comments
Labels: dependencies, github_actions

#1050 - build(deps): bump hynek/build-and-inspect-python-package from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 3 comments
Labels: dependencies, github_actions

#1049 - build(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 4 comments
Labels: dependencies, github_actions

#1048 - test: [Automatic] Constraints upgrades: `imagecodecs`, `imageio`, `ipykernel`, `magicgui`, `pandas`, `pyinstaller`, `qtawesome`, `sentry-sdk`, `tifffile`

Pull Request - State: closed - Opened by Czaki 11 months ago - 2 comments

#1035 - test: [Automatic] Constraints upgrades: `imageio`, `ipykernel`, `ipython`, `numpy`, `pandas`, `psygnal`, `pygments`, `pyinstaller`, `qtconsole`, `scipy`, `sentry-sdk`, `simpleitk`

Pull Request - State: closed - Opened by Czaki about 1 year ago - 2 comments

GitHub / 4DNucleome/PartSeg issues and pull requests