Ecosyste.ms: Issues

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GitHub / 4DNucleome/PartSeg issues and pull requests

#1187 - fix: Fix problem with setting range of auto-generated widget

Pull Request - State: closed - Opened by Czaki 26 days ago - 4 comments

#1186 - chore: Fix coverage files upload by enable hidden files upload

Pull Request - State: closed - Opened by Czaki 26 days ago - 4 comments

#1186 - chore: Fix coverage files upload by enable hidden files upload

Pull Request - State: closed - Opened by Czaki 26 days ago - 4 comments

#1185 - [test-bot] pyinstaller bundle --pre is failing

Issue - State: open - Opened by github-actions[bot] about 1 month ago
Labels: bug

#1184 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago - 4 comments

#1183 - test: `napari==0.5.3` related fixes, Constraints upgrades: `imageio`, `ipython`, `numpy`, `qtconsole`, `scipy`, `simpleitk`, `tifffile`

Pull Request - State: closed - Opened by Czaki about 1 month ago - 4 comments
Labels: skip check PR title

#1183 - test: [Automatic] Constraints upgrades: `imageio`, `numpy`, `scipy`, `simpleitk`, `tifffile`

Pull Request - State: open - Opened by Czaki about 1 month ago - 4 comments
Labels: skip check PR title

#1182 - test: Constraints upgrades: `sentry-sdk` and fix tests

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments
Labels: skip check PR title

#1181 - [test-bot] napari repos test fail

Issue - State: open - Opened by github-actions[bot] about 2 months ago
Labels: bug

#1181 - [test-bot] napari repos test fail

Issue - State: open - Opened by github-actions[bot] about 2 months ago
Labels: bug

#1180 - test: [Automatic] Constraints upgrades: `imageio`, `napari`, `numpy`

Pull Request - State: closed - Opened by Czaki about 2 months ago - 3 comments
Labels: skip check PR title

#1179 - chore: Fix call of logger to properly pass arguments to messages

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1178 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 3 comments

#1178 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 3 comments

#1177 - test: [Automatic] Constraints upgrades: `sympy`, `tifffile`

Pull Request - State: closed - Opened by Czaki about 2 months ago - 3 comments
Labels: skip check PR title

#1177 - test: [Automatic] Constraints upgrades: `sympy`, `tifffile`

Pull Request - State: closed - Opened by Czaki about 2 months ago - 3 comments
Labels: skip check PR title

#1176 - docs: Update changelog

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1176 - docs: Update changelog

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1175 - fix: Fix plugin discovery in bundle to register them in napari viewer

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1175 - fix: Fix plugin discovery in bundle to register them in napari viewer

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1174 - fix: Fix bug in code for checking for survey file

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1173 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 2 comments

#1172 - test: [Automatic] Constraints upgrades: `magicgui`, `sentry-sdk`

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments
Labels: skip check PR title

#1171 - chore: Disable thumbnail generation in napari layer as it is fragile and not used

Pull Request - State: closed - Opened by Czaki about 2 months ago - 4 comments

#1170 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 2 comments

#1169 - test: [Automatic] Constraints upgrades: `napari`, `sentry-sdk`, `tifffile`

Pull Request - State: closed - Opened by Czaki 2 months ago - 5 comments
Labels: skip check PR title

#1168 - fix: Fix trying to access to just deleted measurement profile from edit window.

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1168 - fix: Fix trying to access to just deleted measurement profile from edit window.

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1167 - fix: Prevent error on searching component if there is no component

Pull Request - State: open - Opened by Czaki 2 months ago - 6 comments

#1167 - fix: Prevent error on searching component if there is no component

Pull Request - State: closed - Opened by Czaki 2 months ago - 10 comments

#1166 - fix: Prevent propagation of decreasing contrast limits set by user

Pull Request - State: open - Opened by Czaki 2 months ago - 6 comments

#1166 - fix: Prevent propagation of decreasing contrast limits set by user

Pull Request - State: closed - Opened by Czaki 2 months ago - 8 comments

#1165 - fix: Fix checking if channel requested by MeasurementProfile exists

Pull Request - State: open - Opened by Czaki 2 months ago - 4 comments
Labels: skip check PR title

#1165 - fix: Fix checking if channel requested by MeasurementProfile exists

Pull Request - State: closed - Opened by Czaki 2 months ago - 6 comments
Labels: skip check PR title

#1164 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 2 comments

#1163 - test: [Automatic] Constraints upgrades: `numpy`, `tifffile`

Pull Request - State: open - Opened by Czaki 2 months ago - 3 comments
Labels: skip check PR title

#1163 - test: [Automatic] Constraints upgrades: `numpy`, `tifffile`

Pull Request - State: closed - Opened by Czaki 2 months ago - 3 comments
Labels: skip check PR title

#1162 - build: require napari>=0.5.0 only for python 3.9+

Pull Request - State: closed - Opened by Czaki 2 months ago - 2 comments

#1161 - build: Enforce napari 0.5.0 for Qt6 bindings

Pull Request - State: closed - Opened by Czaki 2 months ago - 3 comments

#1161 - build: Enforce napari 0.5.0 for Qt6 bindings

Pull Request - State: closed - Opened by Czaki 2 months ago - 3 comments

#1160 - ci: use python 3.11 to determine updated packages in PR description

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1160 - ci: use python 3.11 to determine updated packages in PR description

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1159 - feat: Add option to combine channels using sum and max

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1159 - feat: Add option to combine channels using sum and max

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1158 - [test-bot] pip install --pre is failing

Issue - State: open - Opened by github-actions[bot] 2 months ago
Labels: bug

#1157 - build: update install constraints on numpy and qt packages

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1157 - build: update install constraints on numpy and qt packages

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1156 - fix: Add workaround for possible source of numpy 2.0 segfaults

Pull Request - State: open - Opened by Czaki 2 months ago - 4 comments

#1156 - fix: Add workaround for possible source of numpy 2.0 segfaults

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1155 - build: remove PyOpenGL-accelerate from dependencies because of numpy incompatibility

Pull Request - State: closed - Opened by Czaki 2 months ago - 2 comments
Labels: skip check PR title

#1155 - build: remove PyOpenGL-accelerate from dependencies because of numpy incompatibility

Pull Request - State: closed - Opened by Czaki 2 months ago - 2 comments
Labels: skip check PR title

#1154 - feat: Add preview of image metadata

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1154 - feat: Add preview of image metadata

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1152 - fix: fix `use_convex` type from `int` to `bool` for segmentation algorithms

Pull Request - State: closed - Opened by Czaki 2 months ago - 4 comments

#1151 - ci: create only archive with version in name on azures pipeline

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1151 - ci: create only archive with version in name on azures pipeline

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1150 - fix: Fix preparing data for `mahotas.haralick` to avoid overflow problem

Pull Request - State: closed - Opened by Czaki 3 months ago - 6 comments
Labels: skip check PR title

#1149 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 3 comments

#1149 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 3 comments

#1148 - ci: Fix tests for napari from repository

Pull Request - State: open - Opened by Czaki 3 months ago - 4 comments

#1148 - ci: Fix tests for napari from repository

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1147 - ci: Allow to skip spellchecking PR title

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1146 - fix: add pint call to enforce initialization of unit registry

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1146 - fix: add pint call to enforce initialization of unit registry

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1145 - test: [Automatic] Constraints upgrades: `mahotas`, `numpy`, `sentry-sdk`, `sympy`

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments
Labels: skip check PR title

#1144 - ci: Get additional dict from PR branch for checking PR title

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1144 - ci: Get additional dict from PR branch for checking PR title

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1143 - chore: relax numpy constraint

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1143 - chore: relax numpy constraint

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1142 - fix: Workaround for lack of zsd support in czifile

Pull Request - State: open - Opened by Czaki 3 months ago - 4 comments

#1142 - fix: Workaround for lack of zsd support in czifile

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1141 - ci: speedup tests by use `tox-uv`

Pull Request - State: closed - Opened by Czaki 3 months ago - 6 comments

#1140 - docs: Add link for download macOS arm bundle

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1139 - docs: Change homepage URL

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1138 - fix: Fix selection of custom label colors for napari 0.5.0

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1137 - docs: Use `aspell` for check Pull Request title

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1137 - docs: Use `aspell` for check Pull Request title

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1136 - fix: Fix `get_ranges` for empty channels in Image

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1136 - fix: Fix `get_ranges` for empty channels in Image

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1135 - chore: fix bundle build by add missed `napari.yaml` files to bundle

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1134 - ci: [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 3 comments

#1133 - docs: fix PR title spellcheck

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1133 - docs: fix PR title spellcheck

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1132 - refactor: use `"left_to_right"` in place of smart union for pydantic 2 compatibility

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1132 - refactor: use `"left_to_right"` in place of smart union for pydantic 2 compatibility

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1131 - docs: add workflow for spellcheck PR title

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1131 - docs: add workflow for spellcheck PR title

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1130 - chore: Use public API for mouse click event in mask roi

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1130 - chore: Use public API for mouse click event in mask roi

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1129 - docs: Add git-cliff configuration, update changelog

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1128 - test: [Automatic] Constraints upgrades: `napari`, `sentry-sdk`, `sympy`

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1127 - ci: Fix `make_release.yml` to proper detect release, attempt 3

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments

#1126 - ci: simplify release workflow

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1125 - feat: Add mechanism to ask user to fill survey

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1124 - chore: refactor and simplify menu bar creation, add workaround for macOS numpy problem

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1123 - chore: Proper use enum in checking new version

Pull Request - State: closed - Opened by Czaki 3 months ago - 4 comments

#1122 - ci: check if release notes are properly created

Pull Request - State: closed - Opened by Czaki 3 months ago - 3 comments