Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / 38/d4-format issues and pull requests
#85 - Fix Dockerfile
Pull Request -
State: open - Opened by northwestwitch 4 days ago
#84 - Fix issue with wrong values for overlapping bed-ranges
Pull Request -
State: closed - Opened by Jakob37 about 1 month ago
- 1 comment
#83 - feat: Add percent coverage option to stat
Pull Request -
State: closed - Opened by cademirch 2 months ago
- 30 comments
#82 - Efficiently summing coverage tracks from multiple d4 files
Issue -
State: open - Opened by percyfal 3 months ago
- 3 comments
#81 - New stat function: % of positions in intervals with coverage >X
Issue -
State: open - Opened by Jakob37 4 months ago
- 11 comments
#81 - New stat function: % of positions in intervals with coverage >X
Issue -
State: open - Opened by Jakob37 4 months ago
- 2 comments
#80 - Wrong mean coverage values from indexed d4 file
Issue -
State: open - Opened by Jakob37 4 months ago
#80 - Wrong mean coverage values from indexed d4 file
Issue -
State: open - Opened by Jakob37 4 months ago
#80 - Wrong mean coverage values from indexed d4 file
Issue -
State: open - Opened by Jakob37 4 months ago
#79 - Fix coverage spillover bug
Pull Request -
State: closed - Opened by Jakob37 4 months ago
- 6 comments
#78 - Occasionally large differences in coverage for same gene region in same sample
Issue -
State: closed - Opened by Jakob37 5 months ago
- 10 comments
#77 - add -L to curl in build_htslib
Pull Request -
State: closed - Opened by cademirch 6 months ago
- 16 comments
#76 - hack ref_len -1
Pull Request -
State: open - Opened by andypexai 7 months ago
#75 - Bug: off-by-one bug on bam reads
Issue -
State: open - Opened by andypexai 7 months ago
- 1 comment
#74 - Can't install latest pyd4 release
Issue -
State: closed - Opened by cademirch 12 months ago
- 1 comment
#73 - Cut a new release please
Issue -
State: open - Opened by mrvollger about 1 year ago
- 5 comments
#72 - [ENH] convert BED to d4 file.
Issue -
State: open - Opened by ghuls over 1 year ago
#71 - misaligned pointer dereference in `read_next_value`
Issue -
State: open - Opened by shinmao over 1 year ago
#70 - Bug: OSError: memory map must have a non-zero length in load_to_np_impl
Issue -
State: open - Opened by mrvollger over 1 year ago
- 1 comment
#69 - d4tools stats - Show statistics across multiple regions
Issue -
State: open - Opened by pontushojer over 1 year ago
#68 - d4tools view - Flag `--region-file` not working.
Issue -
State: open - Opened by pontushojer over 1 year ago
#67 - Part size limit causing odd results every 10M bases?
Issue -
State: open - Opened by onordesjo almost 2 years ago
#66 - Infer type in bamfile
Pull Request -
State: open - Opened by dotinspace almost 2 years ago
- 1 comment
#65 - fix bug with "~" option exclusive bam mask
Pull Request -
State: closed - Opened by petersudmant almost 2 years ago
- 2 comments
#64 - no apparent size reduction of multi-track files as function of no of samples
Issue -
State: open - Opened by percyfal about 2 years ago
- 1 comment
#63 - WIP: solidify start
Pull Request -
State: open - Opened by brentp about 2 years ago
- 5 comments
#62 - Missing columns when merging multicolumn files depending on order
Issue -
State: closed - Opened by mrvollger about 2 years ago
- 4 comments
#61 - fixed a typo and clarified help message in d4tools view
Pull Request -
State: closed - Opened by mrvollger about 2 years ago
- 1 comment
#60 - Enable `create` to take input from stdin
Issue -
State: open - Opened by jdidion about 2 years ago
- 1 comment
#59 - Bug in view? different values when including the first position in a chromosome
Issue -
State: closed - Opened by mrvollger about 2 years ago
- 4 comments
#58 - Does not compile on M1 mac
Issue -
State: closed - Opened by jdidion about 2 years ago
- 4 comments
#57 - Mapping quality filter not functioning
Issue -
State: closed - Opened by toddrichmond about 2 years ago
- 2 comments
#56 - create fails on some cram/bams
Issue -
State: closed - Opened by petersudmant about 2 years ago
- 13 comments
#55 - [enhancement] stat for a region/list of regions
Issue -
State: closed - Opened by darked89 about 2 years ago
- 5 comments
#54 - Bug in encoding data with pyd4 when using sparse
Issue -
State: closed - Opened by mrvollger about 2 years ago
- 2 comments
#53 - Multitrack D4 from python API without writing multiple intermediate d4 files
Issue -
State: closed - Opened by mrvollger over 2 years ago
- 2 comments
#52 - `d4::task::Histogram::with_bin_range()` returning distribution that is missing `0`s
Issue -
State: closed - Opened by pamelarussell over 2 years ago
- 9 comments
#51 - `d4tools create` builds empty d4 file for small input files
Issue -
State: closed - Opened by pamelarussell over 2 years ago
- 6 comments
#50 - Maintainance of plotters
Issue -
State: closed - Opened by AaronErhardt over 2 years ago
#49 - pyd4 manylinux wheel
Issue -
State: open - Opened by nathanweeks over 2 years ago
#48 - pip install fails
Issue -
State: closed - Opened by tsackton over 2 years ago
- 2 comments
#47 - Update README
Pull Request -
State: closed - Opened by sstadick over 2 years ago
- 1 comment
#46 - change tracking
Issue -
State: closed - Opened by brentp over 2 years ago
- 7 comments
#45 - Dockerfile no longer works with edition = "2021"
Issue -
State: open - Opened by udincer over 2 years ago
#44 - Add some basic stat options: count / sum
Issue -
State: closed - Opened by af8 over 2 years ago
- 1 comment
#43 - exclude bam flag rather than include ?
Issue -
State: closed - Opened by af8 over 2 years ago
- 3 comments
#42 - Build fails on CentOS7 : asks for -fPIC option
Issue -
State: closed - Opened by af8 over 2 years ago
- 7 comments
#41 - Bug in build_htslib.sh?
Issue -
State: closed - Opened by boboppie over 2 years ago
- 2 comments
#40 - d4toh5.py used for manuscript?
Issue -
State: closed - Opened by ivirshup over 2 years ago
- 3 comments
#39 - Typo in page title - Quantatative
Issue -
State: closed - Opened by bossiep1 over 2 years ago
#38 - cargo build. => feature `edition2021` is required
Issue -
State: closed - Opened by lindenb almost 3 years ago
- 1 comment
#37 - Expired SSL certificate causes d4-hts installation to fail
Issue -
State: closed - Opened by ramprasadn almost 3 years ago
- 3 comments
#36 - d4tools is not on cargo, version numbers/releases?
Issue -
State: closed - Opened by holmrenser almost 3 years ago
- 1 comment
#35 - Which d4utils version to use?
Issue -
State: open - Opened by javiercguard almost 3 years ago
- 3 comments
#34 - D4 file format magic number
Issue -
State: closed - Opened by jmarshall about 3 years ago
- 2 comments
#33 - Update README.md
Pull Request -
State: closed - Opened by arq5x about 3 years ago
#32 - README.md refers to nonexistent d4tools crate
Issue -
State: closed - Opened by jmarshall about 3 years ago
- 3 comments
#31 - Adds Dockerfile
Pull Request -
State: closed - Opened by moonso about 3 years ago
- 1 comment
#30 - Dockerfile
Issue -
State: closed - Opened by moonso about 3 years ago
#29 - Dockerfile
Pull Request -
State: closed - Opened by Mropat about 3 years ago
#28 - Update README.md
Pull Request -
State: closed - Opened by arq5x about 3 years ago
#27 - [ENH] Is there utility for single-cell genomics?
Issue -
State: open - Opened by arq5x about 3 years ago
- 18 comments
#26 - [ENH] Multiple file/track support
Issue -
State: closed - Opened by arq5x about 3 years ago
- 1 comment
#25 - [ENH] Add HTTP range support
Issue -
State: closed - Opened by arq5x about 3 years ago
#24 - Update main.rs
Pull Request -
State: closed - Opened by arq5x about 3 years ago
#23 - Odd results from stat command
Issue -
State: closed - Opened by arq5x about 3 years ago
#22 - Version numbers for util subcommands are 0.1.0
Issue -
State: closed - Opened by snystrom about 3 years ago
#21 - Allow view to accept a BED file of regions as input
Issue -
State: closed - Opened by arq5x about 3 years ago
- 3 comments
#20 - Auto-detect sparse (k=0) format.
Issue -
State: closed - Opened by arq5x about 3 years ago
#19 - Update README.md
Pull Request -
State: closed - Opened by arq5x over 3 years ago
#18 - change max bin for stat histogram
Issue -
State: closed - Opened by alxsimon over 3 years ago
- 3 comments
#17 - d4tools create randomly fails
Issue -
State: closed - Opened by af8 over 3 years ago
- 1 comment
#16 - BAM records filtering based on flag ?
Issue -
State: closed - Opened by af8 over 3 years ago
- 4 comments
#15 - Specification for D4 Format?
Issue -
State: closed - Opened by ssadedin over 3 years ago
- 1 comment
#14 - Add links and examples for the C and Python API to the main README.
Issue -
State: closed - Opened by arq5x almost 4 years ago
#13 - Update README.md
Pull Request -
State: closed - Opened by arq5x almost 4 years ago
#12 - stat produces incorrect results when using secondary table
Issue -
State: closed - Opened by snystrom almost 4 years ago
- 8 comments
#11 - Suggestion: automate binary deployment w/ github releases
Issue -
State: open - Opened by snystrom almost 4 years ago
#10 - rename binary d4tools to be consistent with manuscript and convention
Issue -
State: closed - Opened by arq5x almost 4 years ago
- 1 comment
#9 - depth is 0 for samtools/examples/toy.sam
Issue -
State: closed - Opened by lindenb almost 4 years ago
- 3 comments
#8 - stats from repeated regions behave strangely
Issue -
State: closed - Opened by snystrom almost 4 years ago
- 8 comments
#7 - stat breaks pipes
Issue -
State: closed - Opened by snystrom almost 4 years ago
- 2 comments
#6 - Update cli.yml
Pull Request -
State: closed - Opened by arq5x almost 4 years ago
#5 - d4 view and d4 stat should accept a BED file of regions to report on.
Issue -
State: closed - Opened by arq5x almost 4 years ago
- 1 comment
#4 - Update README.md
Pull Request -
State: closed - Opened by arq5x almost 4 years ago
#3 - c-api doesn't allow setting parameters when writing a new d4 file
Issue -
State: open - Opened by brentp almost 4 years ago
- 2 comments
#2 - d4utils stat: show available stats
Issue -
State: closed - Opened by brentp almost 4 years ago
#1 - LICENSE
Issue -
State: closed - Opened by brentp about 4 years ago