0xTCG/biser issues and pull requests

#45 - Longer chromosomes require more memory?

Issue - State: open - Opened by wq-ls about 2 months ago - 1 comment

#44 - python -m biser -o Chr2.bed --max-error 0.2 --kmer-size 1000 -t 10 Chr2.fa

Issue - State: open - Opened by jklFF 3 months ago

#43 - contig level genome

Issue - State: closed - Opened by Hanjunmin 8 months ago

#42 - Result issue

Issue - State: open - Opened by IvanWoo22 9 months ago

#41 - Decomposition ID format

Issue - State: closed - Opened by csmolen6136 11 months ago - 1 comment

#40 - how to get those information from the output of Biser ?

Issue - State: open - Opened by Shuixin-Li 11 months ago - 3 comments

#39 - How to measure the length and frequency of Whole-Genome segmental duplications (SDs)?

Issue - State: closed - Opened by kuangzhuoran 11 months ago - 8 comments

#38 - genotype same segdups across individuals

Issue - State: closed - Opened by svedwards about 1 year ago - 1 comment

#37 - need a positive control for BISER

Issue - State: closed - Opened by svedwards about 1 year ago - 1 comment

#36 - ask for help, the ERROR: BISER failed (-9):

Issue - State: open - Opened by Jiangjiangzhang6 about 1 year ago - 2 comments

#35 - Whether the number of contigs affects the efficiency of BISER

Issue - State: open - Opened by life404 about 1 year ago - 1 comment

#34 - How to filter the output BEDPE file?

Issue - State: closed - Opened by tiramisutes about 1 year ago - 1 comment

#33 - ERROR ：BISER failed (-11)

Issue - State: closed - Opened by jiangjiang030 about 1 year ago

#32 - ERROR: BISER failed (-11):

Issue - State: open - Opened by WHY0929 over 1 year ago - 2 comments

#31 - elementary SDs and core SDs

Issue - State: closed - Opened by likui345 over 1 year ago - 1 comment

#30 - How to run biser

Issue - State: closed - Opened by aravindpad almost 2 years ago - 7 comments

#29 - Error in ERROR Putative SD alignment: '' BISER failed (-11): '' (BISER v1.4

Issue - State: closed - Opened by kuangzhuoran almost 2 years ago - 2 comments

#28 - Cannot modify the max error value when running biser

Issue - State: closed - Opened by yangyxt almost 2 years ago - 3 comments

#27 - how to decomposing segmental duplications (SDs) when i have the SDs annotation files.

Issue - State: closed - Opened by zhoudreames almost 2 years ago - 2 comments

#26 - ERROR: BISER failed (-9):

Issue - State: closed - Opened by dorachu625 almost 2 years ago - 2 comments

#25 - biser failed -6

Issue - State: closed - Opened by jix2010 almost 2 years ago - 3 comments

#24 - Issue with building docker

Issue - State: closed - Opened by aravindpad almost 2 years ago - 4 comments

#23 - BISER failing during putative alignment step

Issue - State: closed - Opened by docmanny almost 2 years ago - 1 comment

#22 - BISER completed on soft_mask, but failed on hard_masked genome.

Issue - State: closed - Opened by Weikai-47 about 2 years ago - 1 comment

#21 - biser v1.3 cannot accept any input files

Issue - State: closed - Opened by yangqimeng99 about 2 years ago - 2 comments

#20 - biser long run time .

Issue - State: closed - Opened by AS11-git about 2 years ago - 2 comments

#19 - Bug fixes

Pull Request - State: closed - Opened by inumanag over 2 years ago

#18 - coordinate overlaps between pairs

Issue - State: closed - Opened by hrrsjeong over 2 years ago - 1 comment

#17 - Parametrization

Pull Request - State: closed - Opened by inumanag over 2 years ago

#16 - Codon compatibility

Pull Request - State: closed - Opened by inumanag over 2 years ago

#15 - It seems generate wrong alignment/CIGAR in bedpe results.

Issue - State: closed - Opened by yuanhao0626 over 2 years ago - 9 comments

#14 - BISER failed:

Issue - State: closed - Opened by cicerocarlos-ufal over 2 years ago - 2 comments

#13 - core region length in the elem file

Issue - State: closed - Opened by hrrsjeong over 2 years ago - 2 comments

#12 - some cross-genome SD not found in "within genome" SD sets

Issue - State: closed - Opened by hrrsjeong over 2 years ago - 3 comments

#11 - Very long runtime, is it possible to resume a killed run?

Issue - State: closed - Opened by EinarBaldvin over 2 years ago - 4 comments

#10 - Does biser suitable for plant SD detection?

Issue - State: closed - Opened by Chenglin20170390 over 2 years ago - 3 comments

#9 - the result of biser with ucsc T2T-CHM13 v2.0 different from the sedef result download from ucsc

Issue - State: closed - Opened by zou-yawen over 2 years ago - 2 comments

#8 - BEDPE fields in output

Issue - State: closed - Opened by saraebell over 2 years ago - 1 comment

#7 - mismatch rate

Issue - State: closed - Opened by hrrsjeong over 2 years ago - 1 comment

#6 - ERROR: BISER failed:

Issue - State: closed - Opened by 002-two over 2 years ago - 2 comments

#5 - ERROR: init() got an unexpected keyword argument 'capture_output'

Issue - State: closed - Opened by Chenglin20170390 almost 3 years ago - 11 comments

GitHub / 0xTCG/biser issues and pull requests